Pseudomonas protegens Pf-5, PFL_5312

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas protegens Pf-5 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
TGGTCGCGGCCCTGCGCAACAGGTTGCCCTGATGACGCGCTTGCGAGGTCGGGTTCCTCTCGGGCAGCGGGGCATGGCGTTGCTGGTCAGCCTGGTGTTC CTGTTGCTGCTGACCCTGATCGGGCTCTCGTCGCTGCAGAACGCCACCCTGCAGGAAAAAATGGCCGCCAGCCTGGCTCTGCACAACCGCGCATTCCAGG CCGCCGAAGCCGCGCTGCGTGTGGGGGAGAGTGCGGTGCAGCAGGATGATTTTCGCTTGCCGGTATGTGCCAGCCCTGCTCAGTGTGCGCCTCCCGCCGA ATCAGCGCTGGTCAAGGCTCCTGGAGTCAATGCTGCTTCGGCGGTGCTGTGGATCGCTAGCGGCTCTGGCTTCTACGGGGTGCAGAACCTCGGTGTTTCA CAGGATGCGGTGAATGTGCCGAGCAATACTCCAGCCACTTTGTATCGCGTGACCGCTGTTGGTCTGGCCGGGCAATCGCGCAGTGTGCTGGAGAGCATCT
DNA Sequence for Gene
>PFL_5312
ATGCCAAGTATTGATCGGGGCATGCGTCGGCCTGGCTGGCGAAGCCTGGGCGCGCTGCTGCTGAGCCTGTTGCCGGTACCTCTGGCCATGGCGTTCAACC CTGCCAGCACCCCGCTTCTTGGTGCCGCGGCGGTGGCGCCGAACGTGATGCTGGTGCTGGATGACTCCCTGGGCATGAACAGCATTGTCCATGCCCGGGA GTTCGATCCGCTGCTCGCCCGGGCTGCGGTCTGGCGCTGTGCCGGAGTGGGGGGCGAGTGTGCTCGGGGTGAGCGGCTTGCAGGCCAGGCGATTGCCTTG TCCAGCCTCGGCGAGTCGGGGTGCCGGGCAGGCTTTCACAGCTTCCATGATCCCGAGCGTGGGGTGCGCTGCCTGAAGCTGCCGGACCCGGTTGGGGCTG GAAATACGCTGTACTCCGCGGACTACCTGTCCTGGCTACTGGCGCAGGCCAAGGGACGGGAGCGAGACTTCACTGACGGTTCCATTCCCAACGACTACCG GATGAATGTGGCTCGGCGGCTGGCCACGGCCCTGGTGACCCGGTATCGCTGGCTGCGCCTGGGGTTGGCCACCTTCAACCCGCCGGCCCCGGGTGATCCG GGCCCTGGGGGTTACATTGCCCGTCCCATCAGCGACCTGTCGGCCATTGAAGGCGCTGTGAGCCCGGCCCAGGCCGAGGCCAATTACCAGGCCCTGCTGG CGACAATCAACGGCCTCAAGGCCGGCGGTCATACGCCGTTGGCGGAAACCTACTACGAGATCACCCGCTACCTGCGCGGCATGATGCCGTACTACAACCT TTCACCGGCGCTCTACAGCAGCCCCATTCAATACCGTTGCCAGAAGAACTACGGGGTAGTGATCAGTGCCGGCGCGGCGGATCACGATACTCAGTTCCCG CTCAACGACCCTTTGGGGGCGGGGCGCCTGCCCAACTGGGACGGGATCGGCAACGATGGTGGCGAGCGCGATGGGCAGACTCTATTCCTCGATGACCTGG CCAAGTTCGCCTTCGATATCGACTTGCGTGGCCCAGGAGTGGATGAGGCCGGGAAAAGCTGGGCGGCGGTGGATTTCCCCCGTCAGTACCTGAATACCTT CACGGTGGGTTTCCAGGCCCACAATCCTCTGCTGATGGGTGCTGCGGACTACGGCCAGGGTGAGTATTACCAGGCCCGCAGCAACCTTGAAGGCGTGCTG GCAGGCGTTCTGGGCGAAGGCGTAGCGAGTGCCGTGACTGCCGGCAGTGGTGTACTGGATGCCGCCAGTGGTCGTTATTACCAGAGCCAGTACGACCCGG TCGATTGGCATGGCACGATCCGCGCCTACGGCATCGACAATCAGGGCCGAGTGGCTGTCGGTTCGCCGTTGTGGAGCAGCGATAGTGGCGTGGATGGTGC CGGCGCGGCGGTAATCCATGAGACCTGGAACACTGCCAGCCGGCGTCCGGTGAGCCTGGCCTACGGCAACTTGTCCACCGCTCAGCGTGGCGAACTTGAG CAGTCGTTGCCTGCAGGTGTCAGTGGCGCCGAGTTACTGGGCTGGAGCCAGGGCCGCTCGGTGAGCGGGCTCAGGGAGCGCCGCTATCAGTTGGGAGATA TCGTCAATTCGCCGCTGGTGCTGGCAACTGCCGGGCAGCGCAGTGCTGTCGATGGGGCTGCCGGGGGCGACTACAGCCGCTACCTGGCACAGAAAGCCAC GGCCATGGCGACGCGCTTGTTGGTGAACAGCAATGACGGGTTGTTCAATGTGCTGGACCCGGCCAGCGGTGAGCGCCTCTATGGCTACATGCCCTCCAGC GCGTTGGGCGCCCTGGCGCAGGTCGCCGATCCCGGTTATCGGCGGGGCGAGCGCCATCGCTATCTGGTGGATGGTCCCCTGGCGGTGTTCGATGGGCAGC GGGGCGGTGCCTGGCAAACCCTGGCCCTGGGGGGCGTCGGGGCGGGCGGCAAGAGTTTCTTTGCGGTGCGTCTGTTCGACGCCGTGCACGGCAATACGCC TGGCGCCTTGTGGGAAATCGGCGCTCCTCCCGAGCCGGACCGCAATCATCCTTTCAATGACCTGGGGTATGCCTATGCCCGCCCACAGGTAGCGCGCTTG GCCGATGGTCGCTGGGCGGCCTTCATCGGCAATGGCTACGGCAGCCATTCCGGGGTGGCAGCGCTGTATGTGGTGGACCTGAATGATGGCTCGCTGATTC GCGAGATCGCCATTGACGACCAGCCTGACAATGGCCTGTCGTCCGTCACCCTCAAGGTCAATGCACGCAATGAAGTGCAGGCGGCCTATGCGGGCGACCT CAAGGGGCGACTGTGGAAATTCGAGCTGTCCGGCAACGATAGCGCCAGCTGGCATCTGGCATTTGCCGGGCAGCCCTTGTTCCGCACCGCGGGAGGCGCC AGCCAGCCGATCAGCGTACCGCCGCGCCTGCTCGATCATCCCCGTGGTGGCCAATTGGTGCTGTTCGGTACGGGCAAGCTCAACGAGACCCGGGACAAGC AAAGCCGGGCGCGCCAGGGATTCTATGGCGTGTGGGACGCCGAGGGCGGTCCTGGGGGCATTGGCGAAAGTCAGTTGCAGGTGCAGCACCTTGAGGCCGG GTTCAGCGCGGCGGCCGGCAGTTTCCTGCGCAGCACCCTCAACGAGGTGCGTTATCCGGCGCAGCGCGGCTGGTACCTGCCCCTGGTACAAGGTGGCCTG GCAGCCGGCGAGCGGGTGCTCAACGAGGCGACCCTGGTGGCCGGCAGGGTGGTGTTCAGCACCCTGCAACTGGAGCCCGACGACCCTTGTTCGAGTGCCG GCAGTGGGAAATTGATCGAGCTGGAGGCGTTCAGCGGTAAGATGCTCGACGCTGCGGTGCTCGACACCAATGGCGACGGGGTCGTGGATGACCAGGACCA GCCCTCCAGCGGCGTGCGCTACGTCGGCACCGTGCCCAGCCTTGGCGGAGTTGCCAGCAATGGCGCCCGCAAGATCATCAGTGACTCCAGGGGTGGCATC AGCACCCTGGTGGAAAGGCCCGGCGGTGGCAGCCGGCGCATCCTGTGGCGACAAATCCAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGAGATTCTTGACCATGCGCAGATCCAACCAAGGTTTTACCCTGATCGAAATCATGATCGTGATTGCGATCATCGGTCTGGTCCTTACGTTGAGCCTTC CCAGCATCACCGAATACGTGAAAAAACCGCACCGCAGCGAAATCGCGGTACTGCTTACCGAGCAGGCGCAGCAGCTTGAACGGCATTTCTCCAAGGCTGG GGTCTACAGCAACGCCCCGGACCTGAGCGCCGGCAATGAGTACTACAGCATTGCCGCAACCCTGACCGACACCGGCTTCTCCCTGACCGCGACCCCGAAG GACGATGGGCTGATGGCGGCGGATAAATGCGGCAGTTTCAGCATCGACCAGACCGGCGCGACCCGCATCAGCGGCCAGGCCGAAGGGCTGACCGCCAAGG ATTGCTGGGGGCTCTGAGCACCTGATTCGGGCCGCGGCGCCCACTGTCTTTCTCATGATTGGATCGGACTATGGCTAAGCAACAGCAAGTGCTGGTGGTG
Amino Acid Sequence
>type IV pilus-associated protein
MPSIDRGMRRPGWRSLGALLLSLLPVPLAMAFNPASTPLLGAAAVAPNVMLVLDDSLGMNSIVHAREFDPLLARAAVWRCAGVGGECARGERLAGQAIAL SSLGESGCRAGFHSFHDPERGVRCLKLPDPVGAGNTLYSADYLSWLLAQAKGRERDFTDGSIPNDYRMNVARRLATALVTRYRWLRLGLATFNPPAPGDP GPGGYIARPISDLSAIEGAVSPAQAEANYQALLATINGLKAGGHTPLAETYYEITRYLRGMMPYYNLSPALYSSPIQYRCQKNYGVVISAGAADHDTQFP LNDPLGAGRLPNWDGIGNDGGERDGQTLFLDDLAKFAFDIDLRGPGVDEAGKSWAAVDFPRQYLNTFTVGFQAHNPLLMGAADYGQGEYYQARSNLEGVL AGVLGEGVASAVTAGSGVLDAASGRYYQSQYDPVDWHGTIRAYGIDNQGRVAVGSPLWSSDSGVDGAGAAVIHETWNTASRRPVSLAYGNLSTAQRGELE QSLPAGVSGAELLGWSQGRSVSGLRERRYQLGDIVNSPLVLATAGQRSAVDGAAGGDYSRYLAQKATAMATRLLVNSNDGLFNVLDPASGERLYGYMPSS ALGALAQVADPGYRRGERHRYLVDGPLAVFDGQRGGAWQTLALGGVGAGGKSFFAVRLFDAVHGNTPGALWEIGAPPEPDRNHPFNDLGYAYARPQVARL ADGRWAAFIGNGYGSHSGVAALYVVDLNDGSLIREIAIDDQPDNGLSSVTLKVNARNEVQAAYAGDLKGRLWKFELSGNDSASWHLAFAGQPLFRTAGGA SQPISVPPRLLDHPRGGQLVLFGTGKLNETRDKQSRARQGFYGVWDAEGGPGGIGESQLQVQHLEAGFSAAAGSFLRSTLNEVRYPAQRGWYLPLVQGGL AAGERVLNEATLVAGRVVFSTLQLEPDDPCSSAGSGKLIELEAFSGKMLDAAVLDTNGDGVVDDQDQPSSGVRYVGTVPSLGGVASNGARKIISDSRGGI STLVERPGGGSRRILWRQIQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site