Pseudomonas protegens Pf-5, PFL_5312

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5312
Name
Replicon chromosome
Genomic location 6078049 - 6081111 (- strand)

Cross-References

RefSeq YP_262380.1
GI 70732617
Entrez 3479704
INSDC AAY94522.1
NCBI Locus Tag PFL_5312
UniParc UPI000054DF96
UniProtKB Acc Q4K5V3
UniProtKB ID Q4K5V3_PSEF5
UniRef100 UniRef100_Q4K5V3
UniRef50 UniRef50_Q4K5V3
UniRef90 UniRef90_Q4K5V3

Product

Feature Type CDS
Coding Frame 1
Product Name
type IV pilus-associated protein
Synonyms
Evidence for Translation
Charge (pH 7) -6.54
Kyte-Doolittle Hydrophobicity Value -0.194
Molecular Weight (kDa) 108034.0
Isoelectric Point (pI) 6.26

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 77 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004214 (352 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5312

Human Homologs

References

No references are associated with this feature.