Pseudomonas protegens Pf-5, PFL_4788 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCAGCCCCATCAGTTGCTTGCCGGGGGAGCGCCCCTGGTTCAGCACCTCGAACAGCACCATGTACCACCAACTGATGAGGAACAGCAGGATGGAGCCG AGGCCGACGCCGACTTCGTCGAAAAAGCCCAGGATGATGAACAGCAGGCCCAGCACCAGCCCGCGGATGCCCAGGTCGAGACTGAAGGCCAGGGTGCGCA CCAGCAACCCCGCAGGCCGCAGCGGCAGGTCGATGCCCTCGGGGGTTTCGACCTGGTAGCGCGTATCCAGTGGCGGGTGCAGCGATGCGTTCCTTGGCGT TGCTGTCGTCTCAAGCATGGGTAACTTATCGGCTTGGTCTGGTAAAAAATCCAGCGCCGATGCTAGCAGTGTCTGAGGGGCAAACGACATCATTAACTAC GAATTCGCCAAGTCCAATGCCTTCGCCCCGGTTCGTGCGGCTGGCCCTGACGGCGCCTGAACGCCTAGACTGCGGCGGTCTTTCAGTTCAGGAACAGGCC
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| DNA Sequence for Gene |
>PFL_4788
|sbcB
GTGACTTCCCTCTTTTGGTACGACTACGAAACCACCGGCATCAATCCGCGTTGTGATCGCCCGTTGCAAGTGGCCGGTATCCGCACCGACCTGGCACTCA ACGAGATCGACGAGCCGGTCAACCTCTACTGCCAGCCCAGCGACGATATCCTGCCCCATCCGATGGCTTGCATGATCACTGGCATCACCCCTGGCCGTCT GGCCGAACAAGGCCTGGGGGAGGCGGATTTCATGACCCGGGTGCACGAGCAACTGGCGCGCCCCGGGACCTGCGGCGTGGGCTACAACACCCTGCGTTTC GACGATGAGATGACCCGCTACAGCCTGTACCGCAATTTCTTCGACCCCTACGCCCGGGAGTGGCAGGGCGGCAACAGCCGTTGGGACCTGATCGACGTGG TGCGCACGGCTTATGCGCTGCGCCCCCAGGGGATCGTCTGGCCCGAGGAGCAGGGGCAGGTAAGCCTCAAGTTGGAGCGCCTGACCGCAGCCAATGGCAT CGATCACGGCCAGGCCCATGACGCGCTGTCCGATGTCCGGGCGACCATCGCCCTGGCGCGATTGGTTCGCGACAAACAGCCCAGACTCTATGACTGGCTG TTCCAGTTGCGCAGCAAGCAGCGGGTGATGGATCAGGTCCGCCTGTTGCAACCCATGGTGCACATCTCCGGGCGCTTTTCTGCGGCGCGCCACTACATCG GCGTGGTCCTGCCCCTGGCCTGGCATCCACGCAATCGCAATGCCTTGATTGTCTGCGACCTGCACCTGGACCCTCAGGGGCTGTTGGAGTTGGACGCCGA AACCCTGCGCCAGCGTTTGTACACGCGCCGGGAAGATCTGCTCGAAGGCGAGTTGCCGGTGCCGTTGAAACTCATCCATATCAATCGCTGCCCGGTCGTG GCGCCATTGAGTGTTCTGCGCAGTGAAGATCAACAGCGGCTGCACTTGGACATGGAGCTATATCAGCGTCGGGCTGTGGCCTTGAGCGAAGCTCAAGAAG TTTGGCGGGATAAACTTTCGGTGATTTATGGGCCGGATGAATTTGCCGCAAGCGATGACCCGGAGCAACAGTTGTACGACGGTTTTATTGGTGACCGTGA CCGGCGTTTGTGTGAGCAAGTACGTGAGGCTGACCCGTTGCACTTGGCCCAGCAACAATGGCCATTCGATGATGAGCGCTTGCCGGAATTACTCTTTCGC TACCGTGCCCGCAACTTTCCAGAAACATTGAACAAAGCCGAGCAAGAACGTTGGCTGGTTTTTTGTCAGCAGCGTTTGCTAGATCCGCAACTCGGTGCTC CCAATACCCTGGAAAGTTTCCGGCAAGGGCTTGAGCAATCGCTGTTAAGTGCGGACCCGATGCAGCGTCAGGTTCTGGATCAATGGCAGGACTATGTGCA GGCCCTGACGAGGCGCCTGGCTCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCTGCCCCGCTCCTTGAGCGGGTTGCCAGGGCATAAAAAAACGCCAGCATGCTGGCGTTTTCTCTGTAGGGCTGCAAAGCCCGGGCGCTCAACGGAG AGGCTTAGCCCAGCAGGGTGGCCCAGCCTTCTACCACGTCGCCGCCCCACTTGGCTTTCCACTCTTTCAGAGTCTTGTGGTTGCCACCTTTGGTTTCGAT GACTTCGCCGTTGTGCGGGTTCTTGTACTGTTTAACTTTACGGGCGCGCTTGGTGCCGGTGGTTTTAACCGCGGCGCGAGGTGCTTTAACTTTCGAGTCC GGATCCAGCAGGGCGATGATGTCGCGCAGGGATTTGGAGTACTCGCCCATCAGGCTGCGCAGTTTGCCTTCGAACTCCAGTTCGGCTTTCAGTTTGTCGT CTTGGGACAGGTTCTTCAAACGCGCTTGCAGTTCTTTGATGGCTTCTTCAGTGGCACGGTATTCGTTGATCAGGGACATGAGGACTACCTTATTGAGCGC
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| Amino Acid Sequence |
>exonuclease I
MTSLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRTAYALRPQGIVWPEEQGQVSLKLERLTAANGIDHGQAHDALSDVRATIALARLVRDKQPRLYDWL FQLRSKQRVMDQVRLLQPMVHISGRFSAARHYIGVVLPLAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCPVV APLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQLYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFR YRARNFPETLNKAEQERWLVFCQQRLLDPQLGAPNTLESFRQGLEQSLLSADPMQRQVLDQWQDYVQALTRRLAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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