Pseudomonas protegens Pf-5, PFL_4788 (sbcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004529 exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000175 3'-5'-exoribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11046
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.420.10:FF:000033 Exodeoxyribonuclease I - - 2 193 1.6E-91
CDD cd06138 ExoI_N - - 5 187 7.19733E-109
FunFam G3DSA:1.20.1280.70:FF:000001 Exodeoxyribonuclease I - - 351 411 2.7E-26
PANTHER PTHR11046 OLIGORIBONUCLEASE, MITOCHONDRIAL IPR022894 Oligoribonuclease 2 420 5.2E-10
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 2 193 4.7E-65
FunFam G3DSA:3.30.1520.20:FF:000001 Exodeoxyribonuclease I - - 206 344 9.4E-53
Gene3D G3DSA:3.30.1520.20 Exonuclease ExoI, domain 2 IPR038649 Exonuclease I, SH3-like domain superfamily 206 344 1.8E-46
Gene3D G3DSA:1.10.287.1240 - - - 412 470 3.0E-7
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 3 195 0.0047
Gene3D G3DSA:1.20.1280.70 Exonuclease ExoI, domain 3 - - 350 411 7.7E-26
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 1 469 1.79E-124
Pfam PF08411 Exonuclease C-terminal IPR013620 Exodeoxyribonuclease I, C-terminal 204 467 7.2E-97
PIRSF PIRSF000977 Exodeoxyribonuclease_I IPR023607 Exodeoxyribonuclease I 1 474 0.0
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 6 185 1.6E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.