Pseudomonas protegens Pf-5, PFL_4627 (phuR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGTGGCACAAGTCCAGGTGCAGCGCGGTGACATCGACCTGCGCGCCACCCACGCCGACCAGCGCCTGCGCCTGCGCGCCGGGGAAAGCGTGCGGGTC GGGCCCCAGGGCTTCGACCAGCCGGCCAGGCTCGACGCCGACAAGGAGCTGGCCTGGGTCCAGGGCCGCCTGGTGTTCGAGAACTGCCCCCTGAGCCAGG TCCTGGCCGAACTGCGGCGCTATTACCCAGGCTGGATCGTCAACAACAACGAACACCTGGCAAAGGTCGCGGTAACCGGCAACTACCGCCTGGATCAGCC TCTGGATGTGGTGCGTTCCCTGGCCCACATCACTTCGGCACGGCTTTCCGAGTTCCCGGCACTAGTGATTCTCAACTGAGAACAATTATTTTTACGCGAT CTCTACGGGTCGTACGTCTCGTTATAGCCAATGCAACTGATTCGCATTTTGAATGCGTATCTGCACCTATAAAAGTTTCGTGCGACCCGGAGCGCTCTCG
|
|
| DNA Sequence for Gene |
>PFL_4627
|phuR
ATGTCCCCTCGCCTCAACAGCCGATCCCCTGTTCCCTGTGCCCGCCTGCAAAACTGCACCCTGTCGCTGCTGACCGCAGCCATCCTGCTGGCCGGCGCCC ACGCTGCCCCCGTGATGGCCGCCGATGCCCCGGCATCCTCCAGCCAGCGCATGGGCAACTACAACTTCGCTATCGCCCAGCAGCCGCTGGTATCGGCGCT CAACGCCTTTACTGCGGTCACCGGCTGGCAAGTGGGCCTGCCGGCGGAGCTGGGCAGCGGGGTGTCCTCCCCGGGCGTGCGCGGTTCGCTGCCACCGGAA AAGGCCCTGGATCGGCTGCTCAGCGGCACCAACCTGAGCTACCGCAAGCTGGGCAACAACAACATCGTTCTGGAAAAGCGCAGCGCAGCCAATGTGGTGA ACCTGCAGCAGGTGACCATCAGCGCCACCCGTCAGGAGCAGGACATCAACTCGGTGCCCAGCACCGTGAGCGTGCACACCCGGGAAGAACTCGACCGCCA GAACGTCAACACGATCAAGGAACTGGTGCGCTATGAACCCGGAGTTTCGGTAGGCGGTGCAGGCCAGCGTGCCGGTATCAGCGGCTACAACATCCGTGGT ATCGACAGCGACCGGATCCTCACCCAGGTGGACGGCGTGGAAGTGCCGGATCACTTCTTCAGCGGCCCTTATGCCAAGACCAACCGGAACTACGTCGACC CGGAAATCGTCAAGCGCGTGGAAATCCTGCGCGGTCCTGCCTCGGTGCTCTACGGCAGCAGCGCCATCGGTGGCGCCGTCAGTTACTACACTCTGGACGC CGACGACATCATCAAGCCCGGCGAGGATTTTGGCGCGCGCCTGAAGACCGGCTACAGCTCGGCGGACGAAAGCTGGCTGAAATCCGGCACCTTCGCCGGA CGGGTCGGCGAATTCGACGGTCTGTTGCACCTGAGCCAGCGTGACGGCCACGAGACCGAGTCCTATGGCAGCAACAACGGCACCGGCCTGAACCGCACTG CCGCCAACCCGGAAGACGCCCGGACCACCAACGTACTGGCCAAGCTCGGCTGGAACTATGCGGACGACGCACGCCTGGGCCTGACCTACGAAAAGTACAA GGACGACCGCGACACCAATCAGAAAAGTGCGGTGGGCGGCCTGTTCCTCAATGGCGTTGGCCAGAACTGGTATCGCTCGCGCGTCGGCAACGACACCATT ACCCGCGAACGCTTCGGCCTGGAAAACAGCTTTGCCCTGGAGTCGCCGATCGCCGACCAGATCAAGTGGAGCCTGAACTACCAGATCGCCAAGACCGACC AGACCACCTCCGAGCGCTACAACCCGGTGTCGATCTTCAGCCCGGTGGCGCGTGACGTGCAGCGTGAGCGGAAAACCCTGTACCAGGAAAAACAATGGGT GTTCGACGCTCAGTTGGACAAGGCCTTCGCCCTGGGTGAAACCGATCACCAGTTGACCTACGGCACCACTCTCAAGCAGCAGAAGGTCACAGGCTCGCGC TATGGTACCGCCAGTTGCCTGGCCGTCGGTGCCGGCTGTACCGCGATTGGCGCGCCGAGCCCTTCTGCCGGTGACAGCGTGAAGAAGTCCAGCGACTTCC CGGACCCGACCATCAACACCTACAGCCTGTTCGTCCAGGACCAGATCAGCTGGAACGCCTGGACCTTCACTCCGGGCCTGCGCTATGACTACACCCAGCT CAAGCCGAAACTGACCCAGGAGTTCCTCAATGTCGCCAACCCCACCGGCAACTTTCCGGTCAGCGACGACAAGAAGACCTGGCATCGGGTTTCGCCCAAG TTCGGCCTGACCTACAGCTTCGACGAGCACTACACGGCCTATGGCCAGTACTCCGAGGGCTTCCGCACGCCGTCGGCCAAGGCGCTCTACGGCCGCTTTG AAAACATCACCACCGGGTACATCGTCGAGCCCAACTCCAACCTCAAGCCGGAAACCAGCAAAGGTTACGAAACCGGCCTGCGAGGTAATTTCGACGCCGG CTCCTTCGATGTCTCGGTGTTCTACAACCAGTACCGCGACTTCATCAACGAAGACGCCATCACCGCCGGCGCGCTGCAATCGGTGATCCAGAGCAACAAC ATCAAACACGCCACCATCAAGGGCGCCGAAGCCAGGGGCCGTCTCAACCTCGATGCCTTCGGTGCACCACAGGGCCTGTACAGCATCGGCTCGCTGGCCT ACGCCTACGGTCGCAACAATGACAACGGCGAACCGATCAACAGCGTCAACCCGCTCAAGGGCGTGTTTGGTCTCGGCTACGACCAGGACAACTATGGCGC GCTGCTGAGCTGGACCCTGGTCAAACGCAAGGACCGGGTCGACAACAGTACCTTCAAGGCCCCGGATGGCCGCACCACCAGCGGCCAGTTCAAGACACCG GGCTACGGCATCCTCGACCTCAGCGGCTTCTACAAGGTCACTGACGACCTGACCGTGAACGCCGGCCTGTACAACCTGACCGACAAGAAATACTGGAACT GGGACGACGTGCGCGGCTACGACAGCGTCGGCGAAGCCGGCCAGACCGCACCCGCCAACCTCGACCGCCTGACCCAGCCCGGCCGCAACTTCTCGGTCAA CCTGGTGTGGGATATCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCCAAACCGCCTCACTGCCCTTTTTCATCCAGGGCAGTGAGGATTTTTTACTGTGTCGCGTCTTCTTGTTCGTCTAGTCACTAAGTGCCTCTCATTCTC AAGGACATCTGCATGACCTCCCAGGATTCCTCCCAGCGTCACCACCTGCGCTCCCAACGCCTGAACCAGATCACCCACGAGCCGCATTCCAAGCTCGACG CCCTGGTCAAGGCCCATGCGCCCTTCGAAACCCAGGGTGCATTCGCCCGTTTCGTGGTGGCCCAGTACCTGTTCCAGTCGGAACTGGTGGACCTGTACAA CGATGCCGAACTGAACAAGATCGTCCCGGACCTGGCCGAGCGCTGCCGCGCCGAAGCTGCCAAGGCTGACCTGGCCGACCTGGAAACCGAGGTTCCTGCG CCAGTGGCCGGTGCCGTCAGCAACCCGAGCCAGGCCGAAGCCCTGGGCTGGATCTTCGTCTCCGAGGGCTCCAAGCTGGGTGCCGCGTTCCTGATCAAGC
|
|
| Amino Acid Sequence |
>TonB-dependent outermembrane heme receptor PhuR
MSPRLNSRSPVPCARLQNCTLSLLTAAILLAGAHAAPVMAADAPASSSQRMGNYNFAIAQQPLVSALNAFTAVTGWQVGLPAELGSGVSSPGVRGSLPPE KALDRLLSGTNLSYRKLGNNNIVLEKRSAANVVNLQQVTISATRQEQDINSVPSTVSVHTREELDRQNVNTIKELVRYEPGVSVGGAGQRAGISGYNIRG IDSDRILTQVDGVEVPDHFFSGPYAKTNRNYVDPEIVKRVEILRGPASVLYGSSAIGGAVSYYTLDADDIIKPGEDFGARLKTGYSSADESWLKSGTFAG RVGEFDGLLHLSQRDGHETESYGSNNGTGLNRTAANPEDARTTNVLAKLGWNYADDARLGLTYEKYKDDRDTNQKSAVGGLFLNGVGQNWYRSRVGNDTI TRERFGLENSFALESPIADQIKWSLNYQIAKTDQTTSERYNPVSIFSPVARDVQRERKTLYQEKQWVFDAQLDKAFALGETDHQLTYGTTLKQQKVTGSR YGTASCLAVGAGCTAIGAPSPSAGDSVKKSSDFPDPTINTYSLFVQDQISWNAWTFTPGLRYDYTQLKPKLTQEFLNVANPTGNFPVSDDKKTWHRVSPK FGLTYSFDEHYTAYGQYSEGFRTPSAKALYGRFENITTGYIVEPNSNLKPETSKGYETGLRGNFDAGSFDVSVFYNQYRDFINEDAITAGALQSVIQSNN IKHATIKGAEARGRLNLDAFGAPQGLYSIGSLAYAYGRNNDNGEPINSVNPLKGVFGLGYDQDNYGALLSWTLVKRKDRVDNSTFKAPDGRTTSGQFKTP GYGILDLSGFYKVTDDLTVNAGLYNLTDKKYWNWDDVRGYDSVGEAGQTAPANLDRLTQPGRNFSVNLVWDI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|