Pseudomonas protegens Pf-5, PFL_4627 (phuR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015886 heme transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015232 heme transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56935 Porins - - 137 868 1.43E-118
MobiDBLite mobidb-lite consensus disorder prediction - - 318 337 -
MobiDBLite mobidb-lite consensus disorder prediction - - 316 337 -
Gene3D G3DSA:3.55.50.30 - - - 47 147 1.7E-23
NCBIfam TIGR01785 JCVI: TonB-dependent heme/hemoglobin receptor family protein IPR011276 TonB-dependent haem/haemoglobin receptor 135 868 4.4E-122
CDD cd01347 ligand_gated_channel - - 155 871 1.54869E-102
Pfam PF07660 Secretin and TonB N terminus short domain IPR011662 Secretin/TonB, short N-terminal domain 81 126 4.8E-9
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 150 259 7.9E-27
NCBIfam TIGR01786 JCVI: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor 136 869 0.0
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 76 127 1.5E-12
PANTHER PTHR30069 TONB-DEPENDENT OUTER MEMBRANE RECEPTOR IPR039426 TonB-dependent receptor-like 122 870 1.8E-109
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 150 274 1.4E-32
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 351 869 6.6E-61
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 275 871 2.6E-129

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.