Pseudomonas protegens Pf-5, PFL_1319 (pcaF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GATGTGGGTTTCCTTGGCGCGGCCCAGGTCGACCGTTTCGGCAATATCAACACCACCGTGGTCGGCGACTACCACCGGCCCAAGGTGCGCCTGCCGGGCG CCGGCGGTGCTCCGGAGATCGCCGGTTCGGCCAAGAGCGTGCTGATCATCCTCAAGCAATCCTCGCGCTCCTTCGTCGACAAGCTCGACTTCGTGACTTC GGTCGGCCACGGCGAAGGCGGCGATTCGCGCAAGCGCCTGGGCCTGCCAGGGGCGGGGCCGGTGGGCATCATCACCGACCTGTGCATCATGGAACCGGAA GCCGGTACCCACGAATTCATCGTCACTTCGCTGCACCCGGGCGTGACCCGCGAGCAGGTGGTGGCCGCCACTGGCTGGGCGATCCGCTTCGCCGACCAGG TGGCCGAGACCGCAGCACCCACCGAGGTTGAACTGACCGCCCTGCGTGACCTGGAAGCGCGCACCGCCGCGGCCCATGGCCAAGCCCCTGGAGAAGCCTG
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| DNA Sequence for Gene |
>PFL_1319
|pcaF
ATGCGCGACGTATTCATCTGCGATGCCATTCGCACCCCCATCGGCCGTTTTGGTGGCGGCCTCTCGACAGTGCGCGCTGACGACCTGGCGGCGCTGCCGA TCAAGGCCTTGATGGAGCGCAACCCCAGCGTGGACTGGAGCTCCGTGGACGAGGTGTTCCTCGGCTGCGCCAACCAGGCCGGCGAGGACAACCGCAACGT GGCGCGCATGGCTCTGCTGCTGGCGGGCCTGCCGGACAGCGTGCCCGGCGTCACCCTCAACCGTCTCTGCGCCTCGGGCATGGACGCCATCGGCACGGCG TTCCGCGCCATTGCCAGCGGCGAGATGGAGCTGGCGATTGCCGGTGGCGTCGAGTCCATGTCCCGCGCGCCCTTTGTCATGGGCAAGGCCGATACCGCCT TTTCGCGCAACATGAAGCTGGAAGACACCACCATCGGCTGGCGTTTCATCAACCCGCTGATGAAGGCCCAGTACGGTGTGGATGCCATGCCGCAGACCGC CGACAACGTGGCGGATGACTACAAAGTGTCCCGCGCTGACCAGGACGCCTTCGCCCTGCGCAGCCAGCAGCGTGCCGCGGCGGCCCAGGCCGCCGGTTTC TTCGCTGAGGAAATCGTTGCGGTGCGCATCGCCCACAAGAAGGGCGAGACAGTGGTGGAGCAGGACGAGCATCCCCGTGCCGACACCACCCTGGAAGCCT TGGCCAAGCTCAAGCCGGTTAACGGCCCGGACAAGACCGTTACCGCCGGCAATGCCTCCGGGGTCAACGACGGTGCCGCGGCGCTGATCCTGGCCTCGGC CGAAGCCGTCAAGAAACACGGCCTGACCCCACGTGCGCGAGTACTGGGCATGGCCAGCGCCGGGGTTGCGCCGCGGGTCATGGGCATCGGCCCGGTGCCG GCAGTGCGCAAGCTGATCGAGCGCCTGGGCGTGGCGGTCAGCGACTTCGACGTGATCGAACTCAACGAAGCCTTCGCCAGCCAGGGCCTGGCGGTGCTGC GCGAGCTGGGCCTGGCGGACGATGCGCCCCAGGTCAATCCCAACGGCGGCGCGATTGCCCTGGGCCATCCCCTGGGCATGAGCGGCGCGCGGTTGGTGCT GACGGCTTTGCATCAGCTGGAAAAGAGCGGCGGTAAAAAAGGCCTGGCGACCATGTGCGTCGGCGTCGGCCAAGGGCTGGCGCTGGCTATCGAGCGCGTT TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCCTGCCTTATATAAGAAGAGAACGAGGAACCACCATGAGTGACAAGCCCGGTTACCGGCGCCCGCAAGCGGGCACTCAGCCTGATTACCTGCACCCG GCCTACCAGTCGACCAACACCCGCTCGCCGTCCAAGCCGCTGGTGTTCATTCCCCACTCGCTGTCGGAAATCACCGGCCCGAGCATCGGCGCCGAGTCGA TCCAGGAACGGGACAACGACCTGACGGCCCAGCACGTAGGGCAGCCCCAGGGCGAGCGCATCATCATCCACGGCCGGGTTCTGGACGAGAACGGCCTGCC GGTGCCGGGCATTCTGGTGGAGATCTGGCAGGCCAACGCGGCCGGTCGCTACAACCACGACCGCGACTTGCACGATGCGCCCCTGGACCCGAACTTCACC GGCACCGGGCGCACCGTGACCGACGCCGACGGCTGGTACCAGTTCCAGACCATCAAGCCCGGGGCCTACCCCTGGGGCAACCACCACAATGCCTGGCGCC
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| Amino Acid Sequence |
>beta-ketoadipyl CoA thiolase
MRDVFICDAIRTPIGRFGGGLSTVRADDLAALPIKALMERNPSVDWSSVDEVFLGCANQAGEDNRNVARMALLLAGLPDSVPGVTLNRLCASGMDAIGTA FRAIASGEMELAIAGGVESMSRAPFVMGKADTAFSRNMKLEDTTIGWRFINPLMKAQYGVDAMPQTADNVADDYKVSRADQDAFALRSQQRAAAAQAAGF FAEEIVAVRIAHKKGETVVEQDEHPRADTTLEALAKLKPVNGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASAGVAPRVMGIGPVP AVRKLIERLGVAVSDFDVIELNEAFASQGLAVLRELGLADDAPQVNPNGGAIALGHPLGMSGARLVLTALHQLEKSGGKKGLATMCVGVGQGLALAIERV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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