Pseudomonas protegens Pf-5, PFL_1135

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas protegens Pf-5 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
TTGATCAGGTGTTTGCCGCAGGCATGGCCGAATGGCTCAGCAGTGCCTCCGGCCTGGAGGTGCGCCTGGCCCGGGAAGGCGAGCCGCCGCAAAGCGGCAA GGTCCTGCTGGCGGGCACCAACCATCATATCCGTCTATTGAAGAACGGCACCCTGGCCTATACCGCCGAGCCGGTGAACGAGATCTACCGGCCCTCCATC GATGTGTTTTTCGAGAGCGTTGCCAGTTTCTGGAATGGCGATGCGGTGGGGGTGCTGCTGACCGGCATGGGCCGTGACGGCGCCCAGGGCTTGAAGCTGA TGCGTGATCAGGGTTATCTGACCATCGCCCAGGACCAGAACAGCAGTGCGGTGTATGGCATGCCCAAGGCGGCCGCTGCCATCGGCGCCGCCTCAGAGAT TCGCCCGCTGGACAAGATCGCTCCACGTTTGCTGGAGATATTTGCCAAATGACTGATAAACGCAGCTGTCCTGGCCAGGTAGCAATTCAGGTGACAACCC
DNA Sequence for Gene
>PFL_1135
ATGAATGATTTACAGCTCGACGAATTCAAGACCGACGAAAATGCCGCCATGGTGTTGCTGGTGGACGACCAGGCCATGATCGGCGAAGCGGTGCGGCGTG GGTTGGCGAACGAGGAAAACATCGATTTCCACTTCTGCGCCGATCCGCACCAGGCCATTGCCCAGGCGATCCGCATCAAGCCCACGGTGATTCTCCAGGA CTTGGTGATGCCGGGCCTGGACGGCCTGACCCTGGTGCGCGAGTACCGCAACCACCCGGCGACCCAGAACATCCCGATCATCGTTCTCTCCACCAAGGAA GACCCGCTGATCAAGAGCGCGGCCTTTGCCGCCGGGGCCAACGACTACCTGGTCAAGCTGCCGGACAACATCGAGCTGGTGGCGCGCATTCGCTATCACT CCCGTTCCTACATGACCCTGTTGCAGCGTGATGCGGCCTACCGCGCCCTGCGGGTCAGCCAGCAGCAACTGCTGGACACCAACCTGGTGCTGCAACGGCT GATGAACTCCGACGGCCTGACCGGGCTGTCCAACCGCCGGCATTTCGATGAGTACCTGGAGCTGGAGTGGCGGCGGGCGATGCGTGAACAGAGCCAGCTG TCGCTGTTGATGATCGACGTCGACTACTTCAAGACCTACAACGACACCTTCGGCCACCTGGAGGGCGACGAAGCCCTGCGCAAGGTGGCCACGGCGATTC GCGAGGCCAGCAGCCGGCCTTCCGACCTGCCGGCCCGCTACGGCGGCGAAGAGTTCGTGCTGGTGCTGCCCAATACCTCGCCGGGCGGGGCGCGACTGGT GGCCGAGAAGCTGCGCCAGACGGTGGAAGCCTTGAAAATCCCCCATATCGCGCCGGTGGAGGGCGCGAGCCTGACCATCAGCATCGGTCTTTCCACCGTA ACGCCGCAGCCCAACAGCCATTGCCGGCAGTTGATTTCGGCGGCGGACAAGGGGCTGTACCTGGCCAAGAACAACGGTCGCAACCAGGTCGGGATCGAGT AA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCGCCTCAGCTTCCAGGCTGCTCGTCGGTCTCCGGGGCCCGAGTGACGGGCACCAGGGTGTCGCCGAACAGGTAGTAGCTGTGGCTTGCGGTTTGCGAGC AGGTGAGAAGGGCGGCTTCGACCCTGTATCGGGTGTGCAGGTCGAGCCTTTTCTCGTTGAAGAGGTTGTTCAGCCGGCAGCAGGCGGCGATGGGGTAGTC ACCGAAGCTGTAGCTGAAGTGGCCATTTCTGTGGCTGGAGACCCAGGTGGCGCTGAATTGACCTTGCAACCACTGGGTCCGGGCTGCCACCTCGCTTTGC TGGCCTTTCAGACGATGGAAGACCCACCACCACAGGAAGATCGCCCACGGCACCAGCAGGGCGCAGGCCAGCCGTGGGGAGATCAATAGCCAGACCCCTT GCAGCAGGATCAGCACGAACAGGCTCAGGAACAGGCATATGAATGCCTGTGCTCCCCTGAGATTGCGACGCTCGCGGGCCTTGATGTAGCGGATTTGCGA
Amino Acid Sequence
>response regulator/diguanylate cyclase domain-containing protein
MNDLQLDEFKTDENAAMVLLVDDQAMIGEAVRRGLANEENIDFHFCADPHQAIAQAIRIKPTVILQDLVMPGLDGLTLVREYRNHPATQNIPIIVLSTKE DPLIKSAAFAAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDAAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQSQL SLLMIDVDYFKTYNDTFGHLEGDEALRKVATAIREASSRPSDLPARYGGEEFVLVLPNTSPGGARLVAEKLRQTVEALKIPHIAPVEGASLTISIGLSTV TPQPNSHCRQLISAADKGLYLAKNNGRNQVGIE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site