Pseudomonas protegens Pf-5, PFL_1135

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 18 130 1.4E-18
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 169 329 2.5E-50
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 153 331 5.8E-59
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 60 331 1.6E-70
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 16 130 2.0E-21
CDD cd17575 REC_WspR-like - - 16 143 1.9122E-84
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 14 146 3.42E-29
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 173 330 9.42E-48
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 163 333 7.6E-54
Gene3D G3DSA:3.40.50.2300 - - - 5 152 5.8E-32
SMART SM00267 duf1_3 IPR000160 GGDEF domain 154 333 1.1E-60
CDD cd01949 GGDEF IPR000160 GGDEF domain 171 330 2.9897E-62
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 164 330 2.2E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.