Pseudomonas protegens Pf-5, PFL_0878 (dppA1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACTTCGACTACCTGCACGAAACCAACGGCATCTACCTGGCCAACTCCCTGCTCTCGGACTTCAACGGCCCGAACGAGAAATCCTTCCAGATCGCCTACGG CCTGAACATGGCCGAGTACGGCGTGCCCGGCCTCAAGTTCAACATCTACCAGGCCCGTGGCTGGGGCATCGACGGTACCCACTACAACGGCACCGCCTAC AGCGGCGTCAAGGCAGACGGTACGGTCTATGGCGTACGCACCATGGACGGCGAGCACCACTACGAATACGGCATCGGTGCTTCCTACGCCGTACAGAGCG GCCCGCTGAAAGCCACCGCGATCCGTGCCACCTACACCACGCACCGCGCCAGCGAGAACCAGGCCGACGGCAACATCAATGAATTCCGACTGGTTACCAC CATCCCATTCAATATTCTCTAACCCACCAGTTGAAGGGCGGATTCATGACGAATCCGCCATTCAAGCTAATCTGGTTCAATCGATTGCAGAGGGTTCCTG
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| DNA Sequence for Gene |
>PFL_0878
|dppA1
ATGAAAATGCTTCCCCTGAAAGCGGCCGTTGGCGCCGCCCTGCTGAGCGTCGCCCTGGGCGCCACAGCCAAACCCTTGGTGGTCTGTACCGAAGCCAGCC CGGAAGGCTTCGATATGGTCCAGTACACGACTGCAGTCACGGCCGACGCAGTGGCGGAAACCATCTTCAACCGCCTGGTGGACTTCAAGCCCGGCACCAC TGACATCGAGCCGGCCCTGGCCGAATCCTGGGACATCAGCCCCGACGGCCTGCAATACACCTTCCATCTGCGCAAGGGCGTCAAATTCCACAGCACCGAC TACTTCACCCCGACGCGCGAGATGAACGCCGACGACGTGCTCTGGAGCTTCCAGCGCCAGCTTGACCCGAAGCACCCCTGGCATGACAAGTCCAGCGTGG GCTTCCCCTATTTCGAAAGCATGGGCTTCAAGGAACTGCTGAAAAGCGTCGAGAAGATCGACGACCACACCGTGGTCTTCACCCTGACCCGCCGCGAAGC CCCTTTCCTCGCCGACGTGGCCATGGCCTTCTCGTCGATCTTCCCGGCCGAATACGCCGACAAGCTGCTCAAGGAAGGCAAGACCTCTGAGCTCAACAGC AAGCCCATCGGCACCGGCCCGTTCATCTTCACCCGCTATGCCAAGGACGCCCAGGTACGCTTCAAGGCCAACCCGGACTACTTCCGCGGCAAGCCGCCGG CCGACCCGCTGGTGCTGGCGATCACCACCGATAACAACGTGCGCCTGCAGAAACTCAAGGCCAACGAATGCCAGATCGCCCTCTACCCCAAGCCCGATGA CATCCCCAGCATCAAGGCCGACGCCAATCTCAAGGTCGACGAGCTAGCCGCGATGACCACCGGCTACATCGCCATGAACACCACGCGCAAATACATGAGC GACGTGCGAGTGCGCAAGGCCATCGACATCGCCTTCGACAAGGAAGCCTACGTCAACAGCCTGTACGGCAAGGGCAACGCCCTGGTGGCCACCGGCCCGT ATCCGCCGACCCTGCTGGGCTTCAACAACAGCCTGAAGAACCCGCCCCGGGATCTGGACAAGGCCCGCGCGCTGCTCAAGGAAGCCGGCGTACCGGAGGG TACGGTTATCACCCTGTTCACCCGCAACGGCGGCGGCCCGACCAACCCCAACCCGATGCTCGGCGCACAGATGATGCAGGCCGACCTGGCCAAGGTGGGC CTCAAGCTCGACATCCGCGTGATGGAGTGGGGCGAGATGCTCAAGCGTGCGAAAAACGGCGAACACGATATGGTGTCGGCGGGCTGGGCCGGGGACAACG GCGATCCGGACAATTTCCTGACCCCGAACCTGAGTTGTGACGCGGCGAAAAACGGCGAAAACTACGCCCGCTGGTGCAACAAGACGTTCCAGGATCTGAT CGACGAAGCACGCTCCGACGCTGAACCCGCCAAACGCGCCGAGCTCTATGAAAAGGCCATGCTGGTTTTCGAACAGGATCAACCGTGGATCCCCATGGCC TATCCGAAAATGTTCACCGCCATGCGCAAGAACGTCGAGGGTTATCACATTAGCCCCCTGACCACTAACAACTTCGCTACCACCCAAGTGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAAGAAACGCCCGCCGTCCTTGACCCCAAGGATGGCGGGAACGCCTAACCGGCTGATTGAGGTACTTCAGAAGATGTTTAGTTTTATTGCCCGCCGTGTG GGGTTGCTGATACCCACATTCTTCGGCATCACCTTGCTGACCTTCGCCTTGATACGCATGATTCCCGGCGACCCCGTGGAAGTCATGATGGGCGAGCGTC GGGTCGACCCTGAGATGCATGCCCAGGCAATGGAACGCCTTGGATTGAACAAGCCGCTGTACGCCCAGTACCTGGACTACATCGGCAAGCTGGCCCACGG CGACCTGGGCGAGTCCCTGCGCACCCGCACCAGCGTCTGGAGCGAATTCACCTCGCTGTTCCCCGCGACCCTGGAACTGTCCATGGCCGCCCTGCTGTTC GCCGGCGTGCTCGGCCTGCTGGCCGGGGTGATCGCCGCCTTGAAGCGAGGGTCGCTGTTCGACCATGGGGTAATGGGGATCTCGCTGGCGGGGTATTCGA
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| Amino Acid Sequence |
>dipeptide ABC transporter periplasmic dipeptide-binding protein DppA 1
MKMLPLKAAVGAALLSVALGATAKPLVVCTEASPEGFDMVQYTTAVTADAVAETIFNRLVDFKPGTTDIEPALAESWDISPDGLQYTFHLRKGVKFHSTD YFTPTREMNADDVLWSFQRQLDPKHPWHDKSSVGFPYFESMGFKELLKSVEKIDDHTVVFTLTRREAPFLADVAMAFSSIFPAEYADKLLKEGKTSELNS KPIGTGPFIFTRYAKDAQVRFKANPDYFRGKPPADPLVLAITTDNNVRLQKLKANECQIALYPKPDDIPSIKADANLKVDELAAMTTGYIAMNTTRKYMS DVRVRKAIDIAFDKEAYVNSLYGKGNALVATGPYPPTLLGFNNSLKNPPRDLDKARALLKEAGVPEGTVITLFTRNGGGPTNPNPMLGAQMMQADLAKVG LKLDIRVMEWGEMLKRAKNGEHDMVSAGWAGDNGDPDNFLTPNLSCDAAKNGENYARWCNKTFQDLIDEARSDAEPAKRAELYEKAMLVFEQDQPWIPMA YPKMFTAMRKNVEGYHISPLTTNNFATTQVK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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