Pseudomonas sp. UW4, PputUW4_04460 (rhlB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. UW4 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGATCATCGAACTGATCGAATCGCAGAAGGCCAGCGGAATAGACGCCTCGCGGATTTTCCTGGCCGGTTTTTCCCAGGGCGGTGCCGTGGTGTTCCAC ACCGCGTTTCTGAAGTGGCAGGGACCGCTGGGTGGCGTCGTTGCCCTTTCTACTTATGCACCGACCTTCAGCGACGAACTGCAACTGTCCGCCAGCCAGC AGCGCATTCCGGTACTGTCGATGCACGGCCAATACGACGACGTGGTGCAGAACTCGATGGGACGCAGCGCCTACGAGCACTTGAAGCATAGTGGTGTCAC CGTGACATGGCAGGAATACCCAATGGGCCACGAAGTGTTACCCGAGGAAATTCGCGACATCGGCACCTGGCTCACCGAGCGCTTGCGTTAATCCTTCAGG TTCCTTTCTTTGTTTAAAGGTCCCTTTGATCCATCCCACTACGCCGCGCCCGATTCTTGCATTACACTGGCCGGCGTACATTCCTTAACCAATTGATGAG
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| DNA Sequence for Gene |
>PputUW4_04460
|rhlB
ATGACCGTGCTCAAAGCACTCAAGAAAATGTTCGGTAAAAGCGAGACTGAGCAACTCGCGCCAGTCCCCAGCGCTCCGTCTCACGCTCCCAGCCACCGCA CCGACGGTAATCAGCCTGAACGGACCGCCACCACGACGGCACCCAAGCATGAGCCCAAGCCCGCACCCGCTGCCCAGCCTGTGGCGATAGCAGCCCCGGA ACAGCCGCTCAGCGAAACACCGAAACCCGCCAAACCGCGCCGCGAACCCAAGCCCAAGGCGCCGGTCATCCCATGGAAACTCGAAGACTTCGTTGTCGAG CCACAGGAAGGCAAAACCCGCTTCCACGATTTCAAGCTGGCTCCTGAACTGATGCACGCCATCCAGGACCTGGGCTTCCCGTATTGCACGCCGATCCAGG CACAGGTGCTGGGTTTCACCCTCGCCGGCAAAGACGCCATCGGCCGCGCCCAGACCGGTACCGGTAAAACTGCTGCCTTTCTGATCTCGATCATCACCCA GTTGCTGCAAACCCCGCCGCCGAAAGAGCGCTACATGGGTGAGCCACGGGCGTTGATCATCGCGCCGACCCGCGAACTGGTGGTGCAGATCGCCAAGGAC GCCGCCGACCTGACCAAGTACACCGGCCTCAACGTCATGACCTTCGTCGGCGGCATGGACTTCGACAAGCAGCTCAAACACCTCGAAGCCCGCCACTGCG ACATCCTGGTGGCCACGCCGGGCCGCCTGCTGGACTTCAACCAGCGCGGCGACGTGCATCTGGACATGGTCGAAGTGATGGTGCTGGACGAAGCCGACCG CATGCTCGACATGGGCTTCATCCCGCAAGTGCGCCAGATCATTCGCCAGACGCCGCCGAAGGCCGAGCGCCAGACACTGCTGTTCTCCGCGACCTTCACC GAAGACGTGATGAACCTGGCCAAGCAATGGACCACCGACCCTGCCATCGTCGAAATCGAAGTCACCAACGTGGCCAACGAAAACGTCGAACAGCACATCT ACGCCGTGGCCGCTGCCGACAAGTACAAGCTGCTCTACAACCTGGTCAACGACAATGGCTGGGAACGGGTGATCGTGTTCGCCAACCGCAAGGATGAAGT GCGACGCATCGAAGAACGCCTGGTGCGCGACGGCATCAACGCTGCGCAACTGTCCGGCGACGTGCCGCAGCACAAGCGCATCAAGACCCTCGAAGGTTTC CGCGAAGGCAAGATCCGCGTCCTGGTCGCCACCGACGTGGCCGGTCGCGGTATCCACATCGACGGCATCAGTCACGTGATCAACTTCACCCTGCCGGAAG TGCCGGACGACTACGTGCACCGCATCGGACGGACCGGTCGTGCTGGCGCCGACGGTGTGTCCATCAGTTTTGCCGGTGAAGACGACTCCTACCAGTTACC GTCCATCGAGGAAAAACTGGGGCGCAAGATCAGCTGTGAAACACCACCGACGCATCTGTTGCGGGCGGTTGAGCGCAAGCGCCCACACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGACGCTGAAAAGACAAGCGCAGCCGGAAACGGACTGCGCTTTTTTTTCGCCCGGATATTGTGAGATACAACTAAAAGTCCATAATGGACAAATTAGTT TACTTTCAGTCCCGGAGCCGACCATGTCCAATACGCCCCAAGTGATCAACCAGAACCAGGCTCGCGAGCTGCTGGCGCAGGTCGACGTGCCGCAGATCCT GCGCAAAATGTTCCGTGACCTGGCGGCCGGGCAAGCCGTGCAACCGGCACAACAACTGGTGGAATTTCCCCAGGGCGCCGGTGACTTCATCAACTACCTG GGTGTGTTGGCCGAAGACGGCGTGTACGGCATCAAGACTTCGCCGTACATCGTCCGTGAGCAGGGACCCTTGGTGACTGCATGGACTGTGCTCATGTCGA TGCACACCGGCCAGCCGCTGTTGCTGTGCGACGCGGGTGAACTGACCACCGCACGCACCGCCGCGACCACCGCCGTGGCCGTCGATGCCCTCGCGCCGCT
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MTVLKALKKMFGKSETEQLAPVPSAPSHAPSHRTDGNQPERTATTTAPKHEPKPAPAAQPVAIAAPEQPLSETPKPAKPRREPKPKAPVIPWKLEDFVVE PQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKD AADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKAERQTLLFSATFT EDVMNLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAAADKYKLLYNLVNDNGWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGF REGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTHLLRAVERKRPH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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