Pseudomonas sp. UW4, PputUW4_04460 (rhlB)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003724	RNA helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00661	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppuu03018	RNA degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	323	494	6.1E-48
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	30	45	-
CDD	cd00268	DEADc	-	-	117	318	1.08291E-93
Hamap	MF_00661	ATP-dependent RNA helicase RhlB [rhlB].	IPR023554	ATP-dependent RNA helicase RhlB type	105	487	52.409248
Pfam	PF00270	DEAD/DEAH box helicase	IPR011545	DEAD/DEAH box helicase domain	130	305	4.2E-48
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	340	449	3.9E-29
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	74	88	-
PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	-	-	103	480	8.6E-124
CDD	cd18787	SF2_C_DEAD	-	-	329	457	1.25922E-56
SMART	SM00490	helicmild6	IPR001650	Helicase, C-terminal	368	449	2.0E-30
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	181	470	7.72E-72
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	94	321	2.2E-75
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	88	-
SMART	SM00487	ultradead3	IPR014001	Helicase superfamily 1/2, ATP-binding domain	125	332	1.6E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.