Pseudomonas sp. UW4, PputUW4_03595 (ligA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. UW4 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGAACATTCTGGAAAGCGGCCTGCGTTTCGGCGAGATGGATATTTTCCATCGTCACGAAAGCATGGCGGGCAACGGCGAGGTGCTGTTCTCCATGGCCAA CGCCGTCAAGCCGGGCGTATTCGACCTGGACGACATCGACCACTTCAGCACCCCGGCGGTAAGTTTCTTCCTGGGTCTGCCAGGCCCTCGCCATCCGAAG CAAGCCTTCGACGTGATGGTGGCCGCAGCGCGCAAATTGTCCCAGGAGCTCAACGGCGAACTGAAGGACGACCAGCGTAGCGTACTGACTGCCCAGACGA TCGAGCACTACCGTCAGCGCATCGTCGAATTCGAACGCCGCGCCCTGACCCAGAAGCGCTAAATCAAACGGAGCTCTCTATGTCAGGAGAGCTTTTGTGG GGAGGGGTAAACCCCCTCGCCACAAATGCAGCCCCTTGCCGGGCCGAAATATGAAAATTGAGCAGCCTCGGCTGCTCTTTTGCTTTACGAGAGAACACCC
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| DNA Sequence for Gene |
>PputUW4_03595
|ligA
ATGACCGCCGCCAAGAACCGCATTTTAGAGCTGCGCGCTGAGCTGGATCAGCACAACTATCGCTATCACGTGCTCGACGAGCCGAGCATTCCGGACGTCG AATACGACCGCTTGTTCAACGAGCTCAAGGCGCTGGAAGCGGCCCATCCCGAGCTGATCACCAGCGACTCGCCCACCCAGCGAGTGGGCAGCGCGGCGCT GTCGGCGTTTACCCAGGTGCGTCACGAAGTGCCGATGCTCAGCCTCGGCAACGCCTTCGAAGAAACCGACATGCGTGAGTTCGACCGCCGGGTGACCGAA GGCCTGGACTTGCCGGCGGGCGACCTGTTCGGTGGCGGCGCAACAGTCGAATACAGCTGCGAGCCCAAGCTCGATGGTCTGGCCGTCAGCCTGTTGTACC AGGATGGCCTCCTGGTGCGCGGCGCGACCCGTGGCGACGGTACAACAGGCGAAGACATCAGCGTCAACGTGCGCACCGTACGCAACATTCCGCTCAAGCT GCACGGTACTGGCTGGCCGGCGACCCTGGAAGTGCGCGGCGAAGTGTTCATGTCCAAGGCCGGTTTCGAACGGCTCAACGCCACGCAAATGGAAGTCGGC GGCAAGACTTTCGCCAACCCGCGCAACGCAGCAGCGGGCAGCTTGCGCCAGCTGGATTCGAAGATCACCGCCAACCGTCCACTGGAATTCTGCTGCTACG GCATCGGCCAGGTGTCGGCGGACATTGCCGATACGCACATCGGCAATTTGCAGCAACTCAAGGCTTGGGGCATGCCGATCAGCCATGAGTTGAAGCTGGC GCAGGGTATCGCCGAGTGCCTGGATTACTATCGCGACATCGGTGAGCGGCGCAATGCGCTGCCCTATGAAATCGACGGCGTGGTGTTCAAGGTCAACAGC ATCGCTTCGCAGCGCGAACTGGGTTTTCGCGCCCGTGAGCCGCGCTGGGCCATCGCCCACAAATTCCCGGCGATGGAAGAGCTCACCGAACTGCTCGATG TGGAATTCCAGGTCGGCCGCACCGGTGCGGTGACACCAGTGGCGCGTCTGAAGCCGGTCAAGGTCGCGGGCGTCACGGTGGCCAATGCCACGCTGCATAA CATGGACGAAGTGGCGCGCCTGGGCCTGATGATCGGCGACACGGTGATCATTCGCCGCGCCGGTGACGTGATTCCGCAAGTGGTGCAGGTGGTCCTGGAG CGTCGTCCGGAAAACGCCCGGCCGGTGCAGATCCCGGAGCAGTGCCCGGTGTGTGGCTCCCATGTCGAGCGCACGCAACTGATCAAGCGCAGCAAGGGTC GCGAGACGGTCAGCGAAGGCGCGGTGTACCGCTGCGTCGGTCGCCTGGCCTGTGGCGCGCAACTCAAGCAGGCCATCATTCACTTTGTTTCCCGTCGAGC CATGGACATCGAAGGCCTGGGCGAGAAGAGCGTCGAGCAACTGGTCGACGAAGGCCTGGTGAGTTCGCCTGCCGATCTGTACGCCCTGACGTTCGAACAG ATCGTCGATCTGGAAGGCTTTGCCGAGCTGTCGAGCAAGAACCTGCTCGGCGCCATTGAAGACAGCAAGAAGCCGGGCCTGGCGCGGTTCATCTACGCCC TCGGGATTCCCGATGTCGGCGAAGAGACGGCCAAGGTGCTGGCCCGCTCCCTGGGTTCGCTGGAGCGGGTGCAGCAGGCCTTGCCGCAGGTGCTGACGTA CTTGCCGGATGTCGGGCTGGAGGTCGCGCACGAGATCCACAGCTTCTTTGAAGACGCGCATAACCAGCAGGTGATCGCTGAACTGCTCAAGCATGGCTTG CAGATTCAGGACCAGGGCGAGTTGGGGGCCGAGTTTGCCGCGAGTACGACATTGGGCGGTTTCCTCGACAAACTGCATATTCCATCGGTAGGTCCGGGCG GGGCGCAGAAACTGGCGGACAAGTTCGGCTCGCTGCAGGCGGTGATCGGTGCTGACTGGCTGGATATGCGTCAGGCGCTGCCGGAGAAACAGGCCAATTC GGTGCGCGAGTTTTTTGCGGACGAGGACAATCGCCAACGCTCGATCACTGCTGAGGCGCAGTTGGCCGAATTCGGCATGCACTGGCAGAGCGAGAAAAAG GTCGTCGAAGGCTTGCCGCTGGCCGGGCAGACCTGGGTGCTGACCGGTTCGCTGGAGCTGATGAGCCGCGATGTGGCCAAGGACAAACTCGAAAGCCTGG GGGCCAAGGTCGCCGGCTCCGTGTCGGCCAAGACTCATTGCGTGGTCGCAGGGCCGGGCGCCGGTTCAAAGTTGACCAAGGCCAATGAGCTGGGGTTGAA GGTGCTGGATGAAGAGGCGTTTGTCGAGTTTCTGCGCGAGCACGATATTTCGGTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCCATTCGCGAGCAAGCCCGCTCCCACATTTAACCGAGTTCTTCCTGAAAAAATCCGATCGAATGTGGGAGCGGGCTTGCTCGCGAAGGCGATTTCAGC ACCTTGGCAGAAAGCCGGAACAATCAACTCTCGGAAATGATCTAGTCTTGGCAAGCCCCAGGAAGAGATCGCCATGCACCCTTTCTTTGAACAGCTCAGC TCGCGCATCGCCGCACCGTTCGTGGCCGAAAGCTCGCGCAACAGCAAGGTCTGGTCCTGTCGTTGCGGGCAATCGCTGTTTTTCCGCAACAGCCAGTGCC TGGCGTGTTCAGCGGCCCTCGGGTATCAACCTGAGCAAAGTCGTTTATCTTCCCTGCAACCGGGCGAGTGCCCCGACACCTGGTGGCTCGACGCCGATCC GCAGGCGGGCGCGTTCCGCCGCTGCGCCAACCTCGATTCACCGGCTGCGTGCAACTGGCTGCTTGCGGCCAATCACCACGAAACCTTGTGCATGGCCTGT
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAAKNRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFNELKALEAAHPELITSDSPTQRVGSAALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTE GLDLPAGDLFGGGATVEYSCEPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRGEVFMSKAGFERLNATQMEVG GKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSADIADTHIGNLQQLKAWGMPISHELKLAQGIAECLDYYRDIGERRNALPYEIDGVVFKVNS IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLE RRPENARPVQIPEQCPVCGSHVERTQLIKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQLVDEGLVSSPADLYALTFEQ IVDLEGFAELSSKNLLGAIEDSKKPGLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVIAELLKHGL QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLQAVIGADWLDMRQALPEKQANSVREFFADEDNRQRSITAEAQLAEFGMHWQSEKK VVEGLPLAGQTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVEFLREHDISV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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