Pseudomonas fulva 12-X, Psefu_3055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fulva 12-X chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGATGGCAAGGTCTCCGGCGAGGGGGACAAGACGCTGTCGCTGCGCGTCGATGGCACCGATATCCAGAGCCAGGGCACCCTGCTGTTCACCGACATTTC GGTCGACCGCAGCACCGGGCAGATCGCCCTGCGCGGGCGCTTCGACAACCCGCAGGGCGTGCTGCTGCCGGGCATGTACGTGCGCGTACGCACGCCGCAA GGACTCGATCAGGAGGCCATTCTGGTACCGCAGCGCGCGGTGCAGCGTGCCGCCGACGGCAAGGCCAGCGTGATGCTGCTGGGCGAAGGCAACAGCGTCG AAGCGCGCCCGGTCACCACCGGCGCCATGCAGGGCGCCCGCTGGCAGATTACCGACGGCCTCAAGGCCGGCGACAAGGTCATCGTAAGTTCCCTGAGCGC GATTCAGCCAGGCGCCAAGGTGGTACCCCGTGAAGAAGGCGCGCCAGCGCCCGACGCGCCCGCCAACCCTTCACAGGCGCAATAAGCCGGAGCCCCTGAC
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| DNA Sequence for Gene |
>Psefu_3055
ATGATGTCTCTGTTCTTTATCCGGCGCCCTAATTTCGCCTGGGTGGTCGCGTTGTTCATCACCATGGCGGGTTTGCTGGCCATCCCCTTCCTGCCAGTCG CCCAATACCCCAACGTGGCGCCGCCGCAGATCACCGTGACGGCTACCTACCCGGGCGCCTCGGCCCAGGTGCTGACCGATTCGGTCACCAGCGTGATCGA GGAAGAGCTCAACGGCGCCAAGAACCTGCTGTACTTCGAGTCCACCAGCAACGCCAACGGCATCGCCGAGATCACCGTGACCTTCCAGCCGGGCACCGAC CCGGAGCTGGCCCAGGTCGACGTGCAGAACCGCCTGAAGAAGGCCGAGGCGCGCATGCCCCAGGCCGTGCTGACCCTCGGTATCCAGACCGAACAGGCCA CCGCCGGCTTTCTGCTGATCTACGCGCTGAGCTACAAGGATGGCGGCGCCAACGACGACACCACGGCGCTGGCCGACTATGCCGCGCGCAACATCAACAA CGAAATCCGCCGGGTGCCCGGCGTCGGCAAGCTGCAGTTCTTCGCCTCCGAAGCGGCCATGCGCGTGTGGATCGACCCGCAGAAGCTGGTGGGTTACGGC CTGTCCATCGATGACGTCAACAACGCCATCCGCGCCCAGAACGTACAGGTGCCGGCCGGTGCTTTCGGCAGCACACCGGGCAGCGCCGAGCAGGAGCTGA CCGCGACCCTGGCGGTCAAGGGCACCCTGGACAACCCCGAGGAATTCGCCGCCATAGTGCTGCGCGCCAACCAGGATGGCTCGCGCCTGACCCTGGGTGA TGTCGCGCGCATCGAGGTCGGCAGCCAGGATTACAACTTCGGCTCGCGCCAGGACGGCAAACCGGCGGTGGCCGCGGCCGTGCAGCTGGCCCCGGGCGCC AACGCCATCCAGACCGCCGAGGCGGTCAAGCAGCGCCTGACGGAGCTGTCCGCCGGTTTCCCGGAAAACGTGCAGTTCTCGGTGCCCTACGACACCTCGC GCTTCGTCGACGTGGCCATCGACAAGGTGATCATGACCCTGATCGAGGCCATGGTGCTGGTATTCCTGGTGATGTTCCTGTTCCTGCAGAACGTGCGCTA CACGCTGATTCCGTCCATCGTGGTGCCGGTGTGCCTGCTCGGCACGCTGACCTTCATGTACCTCTTGGGCTTCTCGGTGAACATGATGACCATGTTCGGC ATGGTGCTGGCCATCGGCATCCTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGGATCATGGCCGAAGAAGGCCTGGCGCCGGTGCCGGCAA CCATCAAGGCGATGGGCCAGGTGTCCGGGGCGATCCTCGGCATCACCCTGGTGCTGTCGGCAGTGTTCCTGCCGCTGGCATTCATGGCCGGTTCGGTAGG GGTGATCTACCAGCAATTCTCGCTGTCGCTGGCGGTGTCGATCCTGTTCTCGGGTTTCCTGGCGCTGACCTTCACTCCGGCGCTGTGCGCCACCATTCTC AAGCCGATCCCCCAGGGGCACCACGAGAAAACCGGTTTCTTCGGCTGGTTCAACCGCAAGTTCACCGGCCTGACCGGCCGCTACACCAAGCTCAACAGCA AGTTGGTACCGCGTGCTGGGCGCTTCATGTTCATCTATCTGGGCATCGTGGTGCTGATGGGTTTCTTCTACCTGCGCCTGCCGGAATCCTTCGTGCCGGT CGAGGATCAGGGTTACATGATCGTCGACATCCAGCTGCCGCCCGGCGCTACGCGCGAGCGCACTTCGGCGACCGGCAAACAGCTGGAGGAATTCCTCGCC TCCCGCGAAGCCGTGGCGACCTCGTTCCTGGTGCTGGGCTTCAGCTTCTCGGGCATGGGCGAGAACGCCGCCATCGCCTTCCCGCTGCTCAAGGACTGGT CCGAGCGCGACTCGGAGCAATCTGTCGAGGCCGAAACCACAGCGGTCAACGGCCGCTTCGCCAACCTCGATGACGGCGCCATGATGGCCGTTCCACCACC GCCGATCGAAGGCCTGGGCAACTCCGGCGGCTTCGCCCTGCGTCTTCAGGACCGCGGCGGCCTCGGCCGCGAAGCACTGTTGGCAGCCCGTGACCAGGTG CTCGGCAAGGTCAACGGCAACCCGCTGTTCCTCTACGGCATGATGGAAGGCCTGGCCGAAGCGCCGCAGCTGCGCCTGGTCATCGACCGCGAGCAGGCGC GCGCCCAGGGCGTCAGTTTCGAGTCGATCAGCAATGCGCTGTCCACTGCCTTCGGCTCCTCGGTGATCAACGACTTCGCCAACGCCGGGCGCCAGCAGCG CGTGGTGGTGCAGGCCGAACAGGCCGCGCGAATGACCCCGGAAAGCGTGCTCAAGCTGCACGTGCCCAACGACAGCGGCAATCTGGTGCCACTCAGCGCT TTCGTGACCACCCAATGGGAACAGGGCCCGGTGCAGGTGGCGCGCTACAACGGCTACCCGTCAATCCGCATCTCCGGCGACGCCGCCCCTGGCGTCAGCA CCGGCGAAGCCATGGCCGAACTGGAACGCATCGCCGCCGAGCTGCCGGAAGGCATCGGCTACGAATGGACCGGCCTCTCCTATCAGGAGAAAGTCGCCAG CGGCCAGGCGGTGATGCTCTTCGCCCTGGCCATCGTGGTGGTGTTCCTGCTGCTGGTCGCGTTGTACGAGAGCTGGGCGATTCCGTTGGCGGTGATGCTC ATCGTGCCGGTCGGTGCACTCGGCGCGGTGCTCGCGGTGACCGCCATCGGCTTGCCCAACGACGTGTATTTCAAGGTCGGCCTGATCACCGTGATCGGCC TGGCAGCGAAGAACGCCATCCTCATCGTCGAGTTCGCCAAGGACCTGTGGGAAGACGGCTACTCGCTTCGCGATGCCGCCATCGAAGCCGCGCGCCTGCG CTTCCGGCCGATCATCATGACCTCCATGGCCTTCATGCTCGGCGTGGTGCCACTAGTGATCGCCACCGGCGCCGGCGCCGCCAGCCAGCGCGCCATCGGC ACCGGCGTGCTGGGCGGCATGTTTAGTGCGACGCTTTTGGGGGTGATCTTCGTGCCGATCTTCTTTGCCTGGGTGCTATCGTTGCTGCGTACCAAACCGC AGCAAACCGACAACCATCCGCTGCATAAAGCGGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGATAGCCTTGGCGGCTATCGCCGATCAGTAGATGCGAGACAGCGCAGCCTTGGCGACCTTGATGCCTTCGCTGCGCTCCAACTCGCCCTTCAGCGCC CCTTCAGCCCTGACGAAGCGCACATCAGTGATGCCCAGGAACTTGAAGAAGCTCTGCAGGTACGGCTCTTGGAAATCCATCGGCGCCATGGGCCCGTGGG AGTAGAAACCGCCGCACACCGATACCACGATCACGCACTTGCCGCCCGCCAGGCCGACAGTGCCGTGCTCGGTGTAGTTGAAAGTGCGCCCCACCTGGGC GATACGGTCGAGCCAGGCCTTCAGCTGGCTGGCAATGGAGAAGTTGTACATCGGCGCGCCGATCACCAGGATGTTGCAGGCCAGAAACTCGTCGACCAGT TGCTCGGAGAGCCGATGCTCGCCTTGTAACGCCTCGTCGGCATTGGCCAGCTCACGGTCTTCGAAGCCAGCGAAGATCGGCCCGGTCAGGTGATTGATGG
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| Amino Acid Sequence |
>hydrophobe/amphiphile efflux-1 (HAE1) family transporter
MMSLFFIRRPNFAWVVALFITMAGLLAIPFLPVAQYPNVAPPQITVTATYPGASAQVLTDSVTSVIEEELNGAKNLLYFESTSNANGIAEITVTFQPGTD PELAQVDVQNRLKKAEARMPQAVLTLGIQTEQATAGFLLIYALSYKDGGANDDTTALADYAARNINNEIRRVPGVGKLQFFASEAAMRVWIDPQKLVGYG LSIDDVNNAIRAQNVQVPAGAFGSTPGSAEQELTATLAVKGTLDNPEEFAAIVLRANQDGSRLTLGDVARIEVGSQDYNFGSRQDGKPAVAAAVQLAPGA NAIQTAEAVKQRLTELSAGFPENVQFSVPYDTSRFVDVAIDKVIMTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLTFMYLLGFSVNMMTMFG MVLAIGILVDDAIVVVENVERIMAEEGLAPVPATIKAMGQVSGAILGITLVLSAVFLPLAFMAGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATIL KPIPQGHHEKTGFFGWFNRKFTGLTGRYTKLNSKLVPRAGRFMFIYLGIVVLMGFFYLRLPESFVPVEDQGYMIVDIQLPPGATRERTSATGKQLEEFLA SREAVATSFLVLGFSFSGMGENAAIAFPLLKDWSERDSEQSVEAETTAVNGRFANLDDGAMMAVPPPPIEGLGNSGGFALRLQDRGGLGREALLAARDQV LGKVNGNPLFLYGMMEGLAEAPQLRLVIDREQARAQGVSFESISNALSTAFGSSVINDFANAGRQQRVVVQAEQAARMTPESVLKLHVPNDSGNLVPLSA FVTTQWEQGPVQVARYNGYPSIRISGDAAPGVSTGEAMAELERIAAELPEGIGYEWTGLSYQEKVASGQAVMLFALAIVVVFLLLVALYESWAIPLAVML IVPVGALGAVLAVTAIGLPNDVYFKVGLITVIGLAAKNAILIVEFAKDLWEDGYSLRDAAIEAARLRFRPIIMTSMAFMLGVVPLVIATGAGAASQRAIG TGVLGGMFSATLLGVIFVPIFFAWVLSLLRTKPQQTDNHPLHKAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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