Pseudomonas fulva 12-X, Psefu_1060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fulva 12-X chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCTGATGGACGACGTGCTGGCCATGGCCACGCGCCCGGTGCTGGTGTCCCACGGCGGCGTCGAGGGCACCTGCCCCGGACCCCGCAACCTCAGCGACC GGCATATCCGCGCCATCGCTGCCACCGGCGGGGTGATCGGTATCGGTTACTGGGACACGGCGGTGTGCGCCACCTCGGTAGCGGCCATCGTCAAGGCGAT CCGCTACACAGCGGACCTGGTGGGCGTGGAGCACGTGGCCCTGGGCTCGGACTTCAACGGCACCATCCACGCACCCTTCGACGTCACCGGCCTGGCGCAA CTGACCGAAGGCCTGCTCGGCGCCGGTTTCAACCGCGCCGATATCGCCGCGATCATGGGCGGCAACGTCCAGCGCCTGCTGCTCGCCAGCCTGCCCAGGA ACTGATCGACAGCCGCGCATGACGCCGGTGGCAGAGTACTTCGCCCTGCCCGCGTCTTGCTTTACACTGGCTGGCGTTCATTCCTTAATCAATCGACGAG
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| DNA Sequence for Gene |
>Psefu_1060
ATGACCGTGCTCAAAGCACTCAAAAAAATATTCGGCAAAGCCGAAAATGAGCCACACAGCTCAGTCTCCCCGAGCCTCGAAGCCACTTCGCCCCCTGCCG CCGCTCCCCGTGAGGAGCGCCAGCCGCGCCCGCCCAAAGAAGCCGCCAGCGCCGAGCAGAAGCCGCCGAGCAAACCCGCCAAGCCGCGCCGCGAACGCGC GCCCAAGCCGGTGGATACCTGGAAGCTCGAGGACTTTCAGGTCGAGCCGGCCCCCGGCAAGACCCGCTTCCATGATTTCAAATTGTCGCCGGAGCTGATG CACGCCATCCACGATCTGGGCTTCCCGTACTGCACGCCGATCCAGGCCGGCGTACTGGGTTATACCCTCAAGGGCCAGGACGCTATTGGCCGCGCCCAGA CCGGCACCGGCAAGACCGCCGCCTTCCTGATCTCGATCATCACCCAGCTGCAACAGACGCCGCCGCCCAAGGAACGCTACATGGGCGAGCCGCGGGCGCT GATCATCGCGCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCCAAGGAGCTGACCAAGTACACAGGCCTCAACGTGATGAGCTTCGTCGGCGGC ATGGACTTCGACAAGCAGCTCAAGAGCCTGGAGTCGCGCTTCTGCGACATTCTGGTGGCAACGCCGGGCCGCCTGCTGGACTTCAACCAGCGCGGCGAAG TGCACCTGGACATGGTCGAGGTGATGGTGCTCGACGAAGCCGACCGCATGCTCGACATGGGCTTCATTCCCCAGGTCCGCCAGATCATCCGCCAGACCCC GATGAAGGGCGAGCGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGACGATGTGATGAACCTGGCCAAGCAGTGGACCACCAACCCGGCCATCGTCGAG ATCGAGCCGGAAAACGTGGCCAGCGACACGGTGGAACAGCACGTCTACGCCGTCGCCTCGGCGGACAAGTACAAGCTGCTCTACAACCTTATCGTGCAGA ACGACTGGACCCGCGTGATGGTGTTCGCCAACCGCAAGGACGAGGTGCGCCGTATCGAGGAGCGCCTGACCCGTGATGGCGTCAGCGCCGCGCAGATGTC CGGCGACGTGCCGCAGCAAAAGCGCATCAAGGTGCTTGAAGGCTTCCGCGCCGGGCATATCCGCGTGCTGGTGGCCACCGACGTGGCCGGCCGCGGCATC CATGTCGACGGAATCAGCCACGTAATCAACTTCACTCTGCCGGAAGACCCGGACGACTACGTGCACCGCATCGGCCGTACCGGCCGCGCCGGCACCAGTG GCACCTCGATCAGCTTCGCCGGCGAGGACGACGCCTTCGCCCTGCCACCGATCGAGGAACTGATCGGCCGCAAGATCCAGTGCGAGACGCCACCGGACGA GCTGCTCAAGGCCGTACCGCGCAAGCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGAACACGCCCAGGCGCAACGCCTGGGTGCCACGCTGCAGTTTCCGGGCATCGGCACCAAGACAGGACGTCCACCCATGAAGCTGAATGTTGATTCCAG TGACCTCAGCCGCGCCGTCCAGGCCGGCGTCCTGCAGCCCGGCCAGGACCAGGCGCTGCTGGCCTTTCTGCAGCAGACGCCCACTGAGCGCCCCAGCTTC CAGCTCTCCCATATCGCCTACTACTTTGGCGCCCTGCTGATCATGGGCGCCATGGGCTGGCTGCTCACCGAAGCCTGGATGAACATCGGCGACCTGGCGC TGCTGGTGATCAGCGCGGCTTATCTGCTGCTATTGCTGCTCTGCGGGCGCAGCCTGTGGCGCCGCGGCCAGCCGATTCCCGGCGGTCTGCTCGGCGCCGT GGCGGTGAGCCTGACACCGCTGGTGGTGTTCGCCGCACAAAGGCTGCTGGGCCTGTGGCCCCTGGATGACGCGCAGGCGGACTACATCGATTACTACCGC
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| Amino Acid Sequence |
>ATP-dependent RNA helicase rhlB
MTVLKALKKIFGKAENEPHSSVSPSLEATSPPAAAPREERQPRPPKEAASAEQKPPSKPAKPRRERAPKPVDTWKLEDFQVEPAPGKTRFHDFKLSPELM HAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAKELTKYTGLNVMSFVGG MDFDKQLKSLESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMKGERQTLLFSATFTDDVMNLAKQWTTNPAIVE IEPENVASDTVEQHVYAVASADKYKLLYNLIVQNDWTRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQQKRIKVLEGFRAGHIRVLVATDVAGRGI HVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFALPPIEELIGRKIQCETPPDELLKAVPRKH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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