Pseudomonas fulva 12-X, Psefu_1060

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfv03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 107 314 9.9E-52
MobiDBLite mobidb-lite consensus disorder prediction - - 57 80 -
CDD cd18787 SF2_C_DEAD - - 311 439 1.98923E-57
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 87 469 52.558167
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 163 447 7.89E-72
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 87 463 4.4E-120
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 313 468 8.4E-47
CDD cd00268 DEADc - - 99 300 1.78862E-92
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 74 312 3.4E-75
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 350 431 2.8E-31
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 112 287 3.5E-48
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 322 431 3.8E-29
MobiDBLite mobidb-lite consensus disorder prediction - - 1 80 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.