Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_3165 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCATACCCGCGAACACCTGGCGGCGGTCATGCCGCTGGAGTCGGCACTGGTCATGGTGATCCTGCGCTGGCCTGCCGACGTGCGTGAGCTGGACAAAC TGGAACTGAGCGACGCAGTGACGGACGTGCAGTTGAACAAAAGTGAACGCGACATGGCCAAGCGTCTGGTCAAGGACATGAGCGCCGACTGGCAGCCTGA GCAGTACCGCGACACTTTTCAGGAAAAGATCATGCACCTGGTCAAAACCAAGGCAGACGAAGGCGAGATCGAGGATGTCGAGACGGATCCGGCTGAGGAA GAGCGCAAAAGTGCCGATGTCATTGACCTCACCGACTTGCTGCGACGCAGCCTGGCGGGCAAGGGGGGCGCCAGTAAAGGCAAAGCGAGCAAGCCCGCAG CAAAAGAAAAACCTGCTGACAAGGCCGCGGCCAAGCCCAAGCGGCCTGCAGCCCCCAAGAAAACCAGCAAAGCCTCTTGAGCCAGACGGAGACACCGGAC
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| DNA Sequence for Gene |
>PSPPH_3165
|ligD
ATGGCCAAGCCCGCCAGTGAATACACGCGCAAGCGCAATTTTGCCATCACCTCCGAGCCTGCCGAAAGCACGCGCAAAGGCAAGTCTTCGTCCAAGGCCA AGGCGCTGGGTTTCGTGATTCAGAAGCATGACGCACGCAACCTGCACTACGACTTTCGACTGGAGCTGGATGGAACGCTCAAGAGCTGGGCGGTACCCAA AGGACCGAGTCTGGACCCGAAGCAAAAACGTCTGGCAGTGCATGTTGAAGACCATCCGCTGGACTATGCCGATTTTGAGGGCAGCATCCCGAAAGGGCAG TATGGCGGCGGTGATGTGATTGTCTGGGACCGTGGCGTCTGGCAGCCGCACGGTGATCCGCAAAAAACCTATGAGGAAGGCAAACTCAAATTTACCCTGG TCGGCGAGAAGCTCAGCGGCGACTGGGCGCTGGTGCGCACGCGGCTCACGGGCAGCGGCAGCAAGGAGCAGTGGCTGCTGATCAAAGAAAAGGACGCCAT TGCGCGACCTGCCGCCGAATATGACATCACTCTGGAGCAGCCGCAGAGCGTGATCAGCGGCGCGCACGTAGGGGCAGGGCGTGCAGCGCCAGCGAAGCCA AAAGCCAGCGCCGCAAACGAAAAAGCCAAAGCCGGTGCAGCGAAGCCTGCGCGCAAGCCCGCGCAAAAGAAGTCGAAAACGGTTTTCCCGGAAACCCTTT CGCCGCAACTGGCCACGTTGGTAGATGCACCGCCAGCGGGTGACTGGCTGTATGAGATCAAGTTCGATGGCTATCGCATTCTGACCCGCATTCAGGGCGA CGAAGTGAGCCTGTTCACCCGTAACGGCCACGACTGGACCGAACGGCTGCCCGAGCTGGTCAAGGCGCTCAAGGGCCTGAAATTGCAAAACAGTTGGTTC GACGGCGAAGTAGTGGTTCTCGACGAGCAAGGGTTGCCCGACTTTCAGGGGTTGCAGATTGCCTTTGACGCAGGGAACAGCAAAAACATCCTGTATTACC TGTTCGATATGCCGTTCCTGAGTGCGGAGGATCTGCGTGAAGTACCCCTTGAACAGCGCCGCGACGCCTTGAAACAAGTGCTCGACGCCCAGCGCAGTCG CCTGCTGCGTTATTCGGATGCGTTTCAGGCCGGGCATCAGGATATCGTGAAAAGCGCTGCGGCAATGGGCCTGGAAGGGGTCATCGGCAAGCGGGCCGGC AGTGTTTATATCGGCAAGCGCAATGCCGACTGGATCAAACTCAAATGCCGGTTGCGTCAGGAACTGGTGATCGTCGGCTACACCGCCCCACAAGGCAGCC GCTCCGCATTCGGGGCCTTGTTGCTGGCGGTCAATGAAGGCGATGAAGGGCTGGTCTATGCCGGGCGGGTGGGTACCGGCTTCAGTGAGGTGACGCTTGA ACAGCTTTATCAACAACTCAAACCGCTGCAGCGCAAGGATTCGCCCCTGGCGAAAAAACTGACCTCGGCTCAGGCCCGCGGCGTGCAGTGGGTAGAGCCG CAGCTGGTCTGTGAGGCGGAATTCGCCCAGTGGACCCGCGAAGGCATTGTGCGACAAGCCGCATTTGTTGGGTTGCGCAGTGACAAGCCTGCCAGTGAGG TGGTGCGCGAAGACGCTCACCCCGCCAGGGTTGCCAGCCAGACCCGGACGCAATCGACATCGGCAGCGCCGCGTTCAGGCAAGAAAACCGCTGCCGGCAA AGGCAAAGTGGACGTGGCGGGCACGGGCATCAGCCATCCGGATCGGGTGATCGACAGCAAGACCGGCACCAGCAAGGTCGAACTTGCGCAGTTCTACGCG TCTATTGCCGAATGGATTCTGCCGTATCTGAACAAGCGTCCTGTGGCATTGTTGCGTTGCCCGGAAGGCATCGACGGCGAGCAGTTCTTCCAAAAGCACG CCGAGCATCTTGCGATTCCACACATCAAACAGCTGGATCGTGCTCTGGACCCCGGGCATGCCGCGCTGATGGAGATCGATTCATTGCAGGCGCTGGTCGG TGCCGCGCAAATGGGGGCCATCGAGTTGCACACCTGGGGCGCTACGCGTGACAGGATCGAAACGCCGGATCATTTTGTACTGGACCTTGATCCCGACCCG GCGCTGCCCTGGCGCAGCATGATCGAAGCCACGCAAATGGTGCTCGCCGTGCTGGAGGAACTTGGGCTGGAAGCTTTTCTCAAGACCAGCGGCGGCAAGG GCATGCACATCATCGTGCCATTGGCGCGGCAGGCTGACTGGGACACGGTTAAAGCCTTCGCCAAGGCTATCGCCGAATTCGTCAGCCGTCAGTTGCCCGA ACGCTTCACCGCGACCATGGGGCCGAAAAACCGGGTAGGGAAAATTTTCATTGATTACCTGCGCAACAGCCGTGGCGGCAGCACCGTGACTGCGTATTCG GTGCGCGCCCGGCCAGGTTTGCCGGTCTCGGTGCCGATTGCTCTGGATGAACTGGCAGGCCTGAAATCCTCGGCGCAGTGGGACATCACCAACCTTGAGC AGCGTTTAAAGAAACTCAAGGCCGACCCGTGGGCAGGCTACAGCAACCGCCGCAAAATCACGCAAAAGATGTGGAAGCAGTTGGGGGCGAAACGGCCCTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACACCCTGTTTCTTTGGTTGTATGGCCGACATGCCAGGCGTGTCGGCCTCAGGCTTGAGGGTCAGAGTATCCGGTACAGCAATCGCTCGACCCGCACAC GGCTGACGCGCTTGAGGAATTTGCGTACCCCTTCGGGATAATTGGCCAGTGTGTCGAGTTCGTCGTACTGGTTGACGCGTTGGGTGTTGCGCATCAAATG GGCGATTTCCGCCTCGCGCGTTTCGCTCCACTGGCCCTGCGGATCATCGATCAGCAAGGCGTTTTCCAAATCAAGATTGAAGGCGCGAGGGTTCAGGTTG TTGCCTGTCAGCAGTGTATAGCGCTGATCGACCCAGATGCCTTTGAGGTGGAACGTATTATCGCCGTGTTTCCACAGGTGCACGTTGAGGCGGTTCTGCG CGATTGCCTTCTGATGCTTGTGGGCAAAGCGTCGCAGGCTGATTTCATACAGATAGGGCAGGGCCGAGATCACCTTGAACGGCTCGTCCGGGTCGATGAA
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MAKPASEYTRKRNFAITSEPAESTRKGKSSSKAKALGFVIQKHDARNLHYDFRLELDGTLKSWAVPKGPSLDPKQKRLAVHVEDHPLDYADFEGSIPKGQ YGGGDVIVWDRGVWQPHGDPQKTYEEGKLKFTLVGEKLSGDWALVRTRLTGSGSKEQWLLIKEKDAIARPAAEYDITLEQPQSVISGAHVGAGRAAPAKP KASAANEKAKAGAAKPARKPAQKKSKTVFPETLSPQLATLVDAPPAGDWLYEIKFDGYRILTRIQGDEVSLFTRNGHDWTERLPELVKALKGLKLQNSWF DGEVVVLDEQGLPDFQGLQIAFDAGNSKNILYYLFDMPFLSAEDLREVPLEQRRDALKQVLDAQRSRLLRYSDAFQAGHQDIVKSAAAMGLEGVIGKRAG SVYIGKRNADWIKLKCRLRQELVIVGYTAPQGSRSAFGALLLAVNEGDEGLVYAGRVGTGFSEVTLEQLYQQLKPLQRKDSPLAKKLTSAQARGVQWVEP QLVCEAEFAQWTREGIVRQAAFVGLRSDKPASEVVREDAHPARVASQTRTQSTSAAPRSGKKTAAGKGKVDVAGTGISHPDRVIDSKTGTSKVELAQFYA SIAEWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIKQLDRALDPGHAALMEIDSLQALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDP ALPWRSMIEATQMVLAVLEELGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFVSRQLPERFTATMGPKNRVGKIFIDYLRNSRGGSTVTAYS VRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKKLKADPWAGYSNRRKITQKMWKQLGAKRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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