Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_3165 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	psp03450	Non-homologous end-joining	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.30.1490.70	-	-	-	246	413	2.0E-44
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	418	537	7.2E-38
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	244	848	0.0
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	233	417	5.41325E-79
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	235	535	3.0E-110
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	592	818	0.0
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	419	534	5.20759E-52
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	245	860	2.2E-105
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	434	529	2.2E-24
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	41	145	4.8E-40
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	239	415	1.8E-25
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	419	538	1.77E-27
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	582	864	1.1E-99
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	225	416	1.99E-44
Coils	Coil	Coil	-	-	822	842	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	544	559	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	33	-
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	577	819	9.6E-88
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	195	228	-
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	6	166	3.2E-70
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	533	583	-
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	257	372	2.0E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.