Pseudomonas syringae pv. tomato DC3000, PSPTO_4221
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGTCTGGCGCAATTTTCAGTCTTTGTCGAAGCAGTGAAAGGCGCATCTTCATCAGACATCCGAACCCAGCTGGGTCCTACCGTGGCGGTCTCGCGTCG TCTTACCACGCCTCAGGGCGACATGATGGTGACAGTCGTGGGAGAGGTGCCGATGGGCACGGCTGAGCGTATTGCATTGTCCATGCGTAACGATGAAACT CCAGTGAAGAAGTAAGCACCCGAAATCACCAGAACGCCCTTGATGTAGAAGTTTTCATCAAGGGTTCGATGAGTCGCCAGACTGCAGTCAATCTGGCCTC GCGCTGAGACGCTGAAATGTTTGGTGAGGTTTGAACGTTGCAAAAAGCCTGTTTTTTTTCTATAGGTCATAGCCTCGCAGCTCTGGCCTTTTGTCGTTTT TAAGGCCACATAGCTGATCCAGGGATGAGCATCGCTGCTCGGGGTCTTTGAGTCAGTTGCTTTGTACTGCTTAATTTTGCTCGTTACGAACGGGAGCCAT
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| DNA Sequence for Gene |
>PSPTO_4221
ATGTCGACACCACGCATGAAATCCTACTTTTCATTGATCGCCGCCGTGCTGATGCTCGGCCAGGTCGCTACAGCCCAGGCAGAAAACCTGCCGGACTTTA CCGGGCTGGTCGAGCAGGCCTCGCCTGCGGTAGTGAACATCAGTACACGGCAGAAACTGCCGGATCGCGCCGTTGCCAACAAGCAGATGCCTGATCTGGA AGGCTTGCCGCCGATGTTGCGCGAATTTCTCGAGCGCAGCATGCCACCAGGTTCGCGCGCACCAGGAGCCGGCAAGGGTGATCGCCAGCGCGAGGCTCAG TCGTTGGGTTCGGGCTTTATCATCTCCCCCGATGGCTATGTGCTGACCAACAACCATGTGATCGACGGTGCCGACGAAATTCTCGTGCGCCTCTCTGACC GCAGCGAATTGAAAGCCAAGCTGATCGGCACCGACCCGCGCACCGATGTCGCCGTGCTGAAAATCGAAGGCAAGGACCTGCCGACCGCCAAGCTGGGTAA TTCCAACACGCTCAAAGTGGGCGAGTGGGTCTTGGCGATCGGTTCGCCGTTCGGTTTCGATCATTCGGTGACCAAAGGTATCGTCAGCGCAAAGGGCCGC AGTCTGCCCAATGACACCTATGTGCCGTTCATTCAGACCGACGTAGCGATCAACCCGGGTAACTCGGGCGGTCCGCTGTTCAACATGGCGGGCGAAGTGG TCGGGATCAACTCGCAGATCTTCACCCGCTCGGGCGGCTTCATGGGCCTGTCGTTCGCCATTCCGATCGATGTCGCCATGGACGTTGCCAACCAGCTCAA GGCCAGTGGCAAAGTCAGCCGCGGCTGGTTGGGCGTGGTTATTCAGGAAGTGAACAAGGACCTGGCGGAGTCGTTCGGTCTGGACAAGCCCGCCGGTGCA CTGGTTGCACAGGTGCTTGAAGATGGTCCGGCGGCCAAGGGTGGTTTGCAGGTCGGTGACGTTATTCTCAGTGCCAACGGCCAGCCAGTCGTCATGTCGG CTGACCTGCCACACCTGATCGGCAACCTCAAGGACGGCAGCAAGGCCGAGCTTGAAGTGATTCGTGATGGCAAGCGTCAGAAACTGACCGTCACTGTCGG CGCGCTGCCGGATGAAGGCCTGGAAATGGGCGGTGCTGCAGGCGCCAGTGCCGAGCGCAGCAGCAACCGTCTGGGCGTTTCGGTGATCGAGCTGACCGCC GAGCAGAAGAAGACGCTGGACATCAAGGGTGGCGTGGCCATCAAGGAAGTCACTGATGGTCCTGCATCGCTGATCGGTTTGCAGCCGGGTGATGTCATCA CTCACCTGAACAATCAGGCGATCACGTCCGGGAAGCAATTCACTGATGTGGCGAAAAGCCTGCCCAAGGACCGTTCTGTCTCGATGCGCGTACTGCGTCA GGGCCGAGCGACCTTCATTACCTTCAAACTGTCGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGCAGGTTTGATCGGGAAGGGTGGCCATGGCCACCCTTTTTTGTGGCTGTTTGTTTGCCGTGCGCCGATCCGGGTGCCTGTAAGCGTGACGCCTCTTG CTTAGTTCAGGTACAATTCCCGGCTATTTTTCGGCGGGCAATCTGCCTGCAACCTTTTTGAGTGTTGATCCGTGAGTGATTTGAGTCATATCCGCAATTT CTCCATCATCGCCCACATTGACCATGGCAAGTCGACGCTGGCCGACCGCTTCATTCAAATGTGCGGCGGCCTGTCCGAGCGCGAAATGGAAGCGCAGGTG CTCGACTCCATGGACCTCGAGCGCGAGCGCGGGATCACCATCAAGGCCCATAGCGTTACCCTGTATTACAAGGCCAAAGACGGTATCACCTACCAACTGA ACTTCATCGACACGCCGGGGCACGTGGACTTCACCTACGAAGTCAGCCGTTCCCTGGCTGCGTGCGAAGGTGCGTTGCTGGTCGTCGATGCCGGTCAGGG
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| Amino Acid Sequence |
>serine protease, MucD
MSTPRMKSYFSLIAAVLMLGQVATAQAENLPDFTGLVEQASPAVVNISTRQKLPDRAVANKQMPDLEGLPPMLREFLERSMPPGSRAPGAGKGDRQREAQ SLGSGFIISPDGYVLTNNHVIDGADEILVRLSDRSELKAKLIGTDPRTDVAVLKIEGKDLPTAKLGNSNTLKVGEWVLAIGSPFGFDHSVTKGIVSAKGR SLPNDTYVPFIQTDVAINPGNSGGPLFNMAGEVVGINSQIFTRSGGFMGLSFAIPIDVAMDVANQLKASGKVSRGWLGVVIQEVNKDLAESFGLDKPAGA LVAQVLEDGPAAKGGLQVGDVILSANGQPVVMSADLPHLIGNLKDGSKAELEVIRDGKRQKLTVTVGALPDEGLEMGGAAGASAERSSNRLGVSVIELTA EQKKTLDIKGGVAIKEVTDGPASLIGLQPGDVITHLNNQAITSGKQFTDVAKSLPKDRSVSMRVLRQGRATFITFKLSE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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