Pseudomonas syringae pv. tomato DC3000, PSPTO_4221

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.42.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 246 371 1.01E-23
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 390 477 1.58E-13
Pfam PF13180 PDZ domain IPR001478 PDZ domain 277 366 1.2E-16
CDD cd00987 PDZ_serine_protease - - 275 364 2.359E-26
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 386 479 3.8E-17
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 273 371 1.1E-28
Gene3D G3DSA:2.40.10.120 - - - 30 268 6.7E-85
SMART SM00228 pdz_new IPR001478 PDZ domain 389 468 7.5E-9
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 6 284 5.89E-70
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 229 246 1.5E-52
MobiDBLite mobidb-lite consensus disorder prediction - - 79 99 -
SMART SM00228 pdz_new IPR001478 PDZ domain 275 357 2.0E-14
Pfam PF13180 PDZ domain IPR001478 PDZ domain 391 470 4.0E-9
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 173 197 1.5E-52
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 31 268 3.2E-99
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 32 475 0.0
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 397 474 8.6E-97
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 112 124 1.5E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 315 327 1.5E-52
Pfam PF13365 Trypsin-like peptidase domain - - 103 236 2.8E-34
CDD cd00987 PDZ_serine_protease - - 390 475 2.26428E-15
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 244 375 8.5E-10
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 207 224 1.5E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 133 153 1.5E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.