Pseudomonas syringae pv. tomato DC3000, PSPTO_3154 (cobM)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0046026 | precorrin-4 C11-methyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:cd11641
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0009236 | cobalamin biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:cd11641
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008168 | methyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:SSF53790
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pst00860 | Porphyrin and chlorophyll metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pst01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | factor 430 biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | siroheme biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR45790 | SIROHEME SYNTHASE-RELATED | - | - | 2 | 230 | 1.7E-57 |
| Pfam | PF00590 | Tetrapyrrole (Corrin/Porphyrin) Methylases | IPR000878 | Tetrapyrrole methylase | 2 | 206 | 4.3E-47 |
| SUPERFAMILY | SSF53790 | Tetrapyrrole methylase | IPR035996 | Tetrapyrrole methylase superfamily | 2 | 241 | 2.09E-66 |
| Gene3D | G3DSA:3.30.950.10 | - | IPR014776 | Tetrapyrrole methylase, subdomain 2 | 111 | 232 | 6.6E-35 |
| Gene3D | G3DSA:3.40.1010.10 | - | IPR014777 | Tetrapyrrole methylase, subdomain 1 | 1 | 109 | 9.3E-30 |
| CDD | cd11641 | Precorrin-4_C11-MT | IPR006362 | Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase | 6 | 228 | 4.41008E-117 |
| NCBIfam | TIGR01465 | JCVI: precorrin-4 C(11)-methyltransferase | IPR006362 | Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase | 3 | 247 | 1.7E-94 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.