Pseudomonas syringae pv. tomato DC3000, PSPTO_2484
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTGAGTATCGACGGGCAGGGCAAGCTGTTCATCAACAAGGATGAAATCCAGCCGGACTTACTGGAAACCAATCTCAAGGCCGCCAAAGAAAAGGCCCC GGAGGTGCGCGTGCAGTTGCAGGCCGACAATGGCGTGAACTACGGCGAAGTGGCGCGGGCAATGGCCTCCATCGAGCGTGCCGGGATTACCAAACTGTCG GTGATCACCGCTAAATAACCGGCCTTTCCCTCATACAGCTTCAACCGTTTTGGGCCGCATCCTCAGGCAGGTGCGGCCTTTTTTTGGGTGTTTTTCAAGG ATGTTTCCAGCGTGACACAAATGTAGATGCTTATGCATTAATGATATTTAAAACTTTCGATCAATGTCATTAAGCTATAAAGCATCGGGCCACCGGACTA TCAATCAAACACTGTAATGATCGCCACCGTCCGCCGCACGGATCGCTCGTTGTAACCAGAACGCACGTTTCTGGATCAGGGATTTTCAAGGGGTAGTGGT
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| DNA Sequence for Gene |
>PSPTO_2484
ATGGGGAACTTCAAACGCAACGTGCTGGCCACGGCGATTTTTTCAGCCAATTTGCTGAGTGTCGCCGGTATCAGCGCAAACGCTTACGCCGCAGAAACAA CAGATGAACAAAACAATCAGGGCGCGTCCACGCTGGGCACGGTAATTGTCACCGGCACCCGCGCGCAGGAGCGTACCGCCAGTGCGTCGCTGTCGCCCAT CGACGTGATCTCCGGTGATAGCCTGCGCAGTTCCGGCTCCAGCGAACTGGGCACCGTGCTGGCGCGCTTGATTCCGTCGATCAACTTTCCGAGGCCAAGC CTGGTGGACGGTGCGGAGCTGACCCGTCCGGCGCAACTTCGCGGCCTGTCGCCGGATCAAGTGCTGGTGCTGGTCAACGGCAAGCGCCGCCACACGTCGG CCTTCGTCAACCTGGGTGGCGCGGTCGGACGCGGCTCGGCACCTGCCGATCTCAACGCTATTCCGCTGTCGGCCATCGACCACATCGAAGTACTGCGCGA CGGTGCTTCGGCGCGCTACGGGTCGGATGCGATTGCCGGGGTGATCAACATCATCCTCAAGAGCGCTGATCACGGCGGTTCGATTTCAAGTAAATACGGC CAGTACAAGAAGGGCGACGGTATCCAGCGTCAGGTCTCCGGCAATACCGGTTTTGCGCTGGGCGACAACGGTACGCTGAACCTCTCGGGTGAAGGCGCCA ACAACGACTACACCAACCGCGCGGGCGATGATTTGCGCGCATCGAGCATCGGCTCTACCACGTATGGTCAGCAGGTATTCCGTCAGGGCGAGCCGGAAAC CCACGAAGGCAAACTGCAGTACAACGCCGAATACAGCTTCAACGATGCGGCGGAATTCTACAGCTTCGGGGGCTACAGCAAGCGCCGCGGCGAAACGGCT GCGTTCTATCGACCGAGCAATGCCTCGAACAACATTGCGGCGATTTATCCAAACGGTTATTTGCCGCTGATTCACGGCACGCTGGAAGACACCACATTTG TCACCGGCTTGCGCGGTGAGCTGGCGGATGACTGGCATTACGACCTGTCTGCCAACTATGGCAAAAACTCTTATGAGCTGCGCACCAAAACCATCAACAC GTCACTGGGCCTGAACACGCCGCGCTCGTTCGATAACGGCACGCTGACCAACGACCAGAAACAGCTAAGCCTGGACCTGTCGCGGGAGTTCAACGCAACG TGGCTGCCTTACCCGGTGTCGGTCGCCTTTGGTGCGGAATACCTGCGTCAGGGTTATCAGATCGAGGCGGGGCAGGCGGAGTCGTATTTCCAGACCGGCA GTTCCGGGCTGGGCGGCTTTCGCGCTGCCGATGCGGGCAGTTACTCGCGACACAACTTCGCCCAGTATCTGGACGTTGAGACCAACCTGACCGAAAAACT GGGTGTGTCGGCCGCCGTTCGCCATGAGGACTACAGCGATTTCGGCTCCAACGTCAGTGGCTCGCTCTCGGCCCGCTACGATTTCACCCCGCAGGTGGCC CTGCGTGGCAGCGTATCGACGGGCTTCCGTGCGCCATCGCTGGCCCAGCAGAACTTCACGTTTACCTCGTCACAGTTGATCGGCAGCACCATTCAGGAAG CGGGTACGTTCCCGGCCGGCAGCAACGTTGCGCAGTTGTTGGGCGCAGAAGACCTGAAACCCGAAAAGTCGCGCAACTACAGCCTGGGCCTGGTACTGCA ACCGCTGGATAGCCTGACCGTGACGGCCGACGTCTACCGCATCGACATTCAGGACCGCATCTCGCTGTCGTCCAACCTGGTGCTCAACAACACCGCGATC AACTACCTGCGCGCCAATGGCGTGGGCGATATCAACTACACCAGCGCGCGTTACTTCACCAACGCCACCGACACCAGCACCGACGGCGTGGATCTGGTGG CCAATTATCGCTACCAGTTCGACAACGGCGTGCGCTGGAACAGCACGGTGGGCTACAACTACAACCACACCAAAGTCACGGATGTGAAAGACAACCCGGC GATCCTCAATCAGTTGGGCGTGAACCTGGTTCGGGTGGACCGCAGGGAACGCATCGGTCTGCTCGGCGACACCACACCTCAGCATAAACTGACGCTGGGT AACGACCTCACGTTCGGCAACTGGGCGCTGCACTCCAATCTGGTGCGCTACGGCGAGTTCACCAGCTACCAGGCCGACAAAGTCAACGACCAGACCTTCA GCGCTGCCTGGTTGCTGGACCTCGCTGCCGACTACAAACTCAAGAACTGGGTCTTCACACTGGGCGGCGACAACGTCACCGACAAGTACCCCGAGAAACT CAACGACTTCTCGTCAAGCGGCGGCAACCTTGCCTACAGCACCTTCTCGCCTTACGGTTATAGCGGGGCGTTTTACTACGGGAAGGTGACGTATAACTGG TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTGATTGGCCGGCAGCTCGTAGCGCTCCGCGTCACATCTGTGCTGCAACACAGAGGCATGCCGTGCGCATAGTTACTGCACATAAACGAAAGCGCTTTT TTATCACGATGGCACTGACAACGCAGAGTGCGACGTAGGTGACGGCTGAGTCCTGACACTGATCCGGGGGTAGCTCGGCAGGACGCCGAGCTAGCCGCAC CGTGCCATGGATGGCACGTTGCGGCGACCCCCGGATCAGTGTCAGGACGAAGGAACCCGACGAAGTCGGGCCGGAAACGGAGCCGGGATAATGAGATGGT CAGCCCGATCCGAGAAACCCGGAGTGTCTACACTTTCCGGGTTTCTCTCTAACGTCGAGGAGATCACTCATGAAAAACGGCCTCAAGCTCTTAGGCATCG ACATTGGTAAAAACAGTTTTCACCTCATAGGCCATGATGCAGGCGGCCACCAAGTATTACGCAAGTGCTTCAATCGCAATCGCCTTCTGCAGTTTGCGGC
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| Amino Acid Sequence |
>TonB-dependent siderophore receptor
MGNFKRNVLATAIFSANLLSVAGISANAYAAETTDEQNNQGASTLGTVIVTGTRAQERTASASLSPIDVISGDSLRSSGSSELGTVLARLIPSINFPRPS LVDGAELTRPAQLRGLSPDQVLVLVNGKRRHTSAFVNLGGAVGRGSAPADLNAIPLSAIDHIEVLRDGASARYGSDAIAGVINIILKSADHGGSISSKYG QYKKGDGIQRQVSGNTGFALGDNGTLNLSGEGANNDYTNRAGDDLRASSIGSTTYGQQVFRQGEPETHEGKLQYNAEYSFNDAAEFYSFGGYSKRRGETA AFYRPSNASNNIAAIYPNGYLPLIHGTLEDTTFVTGLRGELADDWHYDLSANYGKNSYELRTKTINTSLGLNTPRSFDNGTLTNDQKQLSLDLSREFNAT WLPYPVSVAFGAEYLRQGYQIEAGQAESYFQTGSSGLGGFRAADAGSYSRHNFAQYLDVETNLTEKLGVSAAVRHEDYSDFGSNVSGSLSARYDFTPQVA LRGSVSTGFRAPSLAQQNFTFTSSQLIGSTIQEAGTFPAGSNVAQLLGAEDLKPEKSRNYSLGLVLQPLDSLTVTADVYRIDIQDRISLSSNLVLNNTAI NYLRANGVGDINYTSARYFTNATDTSTDGVDLVANYRYQFDNGVRWNSTVGYNYNHTKVTDVKDNPAILNQLGVNLVRVDRRERIGLLGDTTPQHKLTLG NDLTFGNWALHSNLVRYGEFTSYQADKVNDQTFSAAWLLDLAADYKLKNWVFTLGGDNVTDKYPEKLNDFSSSGGNLAYSTFSPYGYSGAFYYGKVTYNW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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