Pseudomonas mendocina NK-01, MDS_4591

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42944
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016798 hydrolase activity, acting on glycosyl bonds
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42944
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019104 DNA N-glycosylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01084
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00633 Helix-hairpin-helix motif IPR000445 Helix-hairpin-helix motif 99 127 2.4E-8
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 31 188 3.57174E-53
PANTHER PTHR42944 ADENINE DNA GLYCOSYLASE IPR044298 Adenine/Thymine-DNA glycosylase 4 346 4.6E-104
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 35 168 6.8E-20
FunFam G3DSA:1.10.1670.10:FF:000002 Adenine DNA glycosylase - - 129 211 1.3E-27
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 21 132 3.5E-88
NCBIfam TIGR01084 JCVI: A/G-specific adenine glycosylase IPR005760 A/G-specific adenine glycosylase MutY 5 277 2.7E-108
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 4 225 1.57E-75
SMART SM00478 endo3end IPR003265 HhH-GPD domain 39 190 8.8E-49
Gene3D G3DSA:3.90.79.10 Nucleoside Triphosphate Pyrophosphohydrolase - - 225 350 2.4E-15
Pfam PF14815 NUDIX domain IPR029119 Adenine DNA glycosylase, C-terminal 237 343 1.5E-21
SUPERFAMILY SSF55811 Nudix IPR015797 NUDIX hydrolase-like domain superfamily 220 345 1.02E-24
CDD cd03431 DNA_Glycosylase_C IPR029119 Adenine DNA glycosylase, C-terminal 237 345 8.19668E-16
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 10 211 3.5E-88
FunFam G3DSA:1.10.340.30:FF:000002 Adenine DNA glycosylase - - 21 135 1.7E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.