Pseudomonas mendocina NK-01, MDS_3831

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 91 476 7.6E-121
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 82 318 1.7E-74
CDD cd00268 DEADc - - 105 306 9.63576E-92
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 118 293 5.2E-48
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 319 473 2.7E-46
MobiDBLite mobidb-lite consensus disorder prediction - - 63 77 -
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 356 437 5.8E-31
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 93 475 52.487427
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 113 320 3.2E-51
MobiDBLite mobidb-lite consensus disorder prediction - - 1 77 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 169 452 8.4E-71
CDD cd18787 SF2_C_DEAD - - 317 445 2.29165E-56
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 328 437 5.8E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.