Pseudomonas mendocina NK-01, MDS_3057

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_3057
Name
Replicon	chromosome
Genomic location	3379895 - 3380854 (+ strand)

Cross-References

RefSeq	YP_004380840.1
GI	330503971
Entrez	10457839
INSDC	AEB59088.1
NCBI Locus Tag	MDS_3057
UniParc	UPI000206DAB1
UniProtKB Acc	F4DL90
UniProtKB ID	F4DL90_PSEMN
UniRef100	UniRef100_F4DL90
UniRef50	UniRef50_Q9I3S3
UniRef90	UniRef90_Q4KGD3

Product

Feature Type	CDS
Coding Frame	1
Product Name	putative agmatinase
Synonyms
Evidence for Translation
Charge (pH 7)	-11.92
Kyte-Doolittle Hydrophobicity Value	-0.123
Molecular Weight (kDa)	34947.6
Isoelectric Point (pI)	4.87

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
3NIO	HYDROLASE	06/16/10	Crystal structure of Pseudomonas aeruginosa guanidinobutyrase	Pseudomonas aeruginosa	2	X-RAY DIFFRACTION	90.3

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 431 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001341 (475 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_3057 Search term: putative agmatinase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000364986 agmatinase [Source:HGNC Symbol;Acc:HGNC:18407] E-value: 3.1e-108 Percent Identity: 60.3

References