Pseudomonas stutzeri CCUG 29243, A458_11540 (ligA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri CCUG 29243 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCGGTCTGCCCGGCCCACGCCATCCCAAGCAGGCCTTCGATGTCATGGTTGCTGCGGCGCGCAAGCTGTCCCAGGAGCTCAACGGCGAGCTGAAGGAT GACCAGCGCAGCGTTCTCACCGCCCAGACCATCGAGCACTACCGCCAGCGCATCGTCGAGTTCGAGCGCCGGCAGATGACCATCAAGCAGCGTTGAGTGA TATTTGCACCGGGCCTTGCGCCCGGTGTTGTGTGTTAGCTGACGTGGCTTGCTCGCGCCGTCTCATGCTCATGTCTCCAGTGCAGCCATTCCATTGACGG GCGCGCTCCGCCTCTGTCCATCAGTGAGCAGTTTGATTCGGGATGGCTGAGGCCGTCCCGCTGCGCTTCCAGCCTCCGACTAGCCAAAGCCGCGAACCTG CCTTCGATCGCGCATTCGGGCTAGAATCCGACGCCTCACTATCAACCAAGGCGCGCTGATACGGTCTGAATCAGCACAGCCCCAGCCACGGCTCCGTCTT
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| DNA Sequence for Gene |
>A458_11540
|ligA
ATGCCTTCCGCCCAAACCGCCGCCGAGCGCATCGCCGAACTGCGCGGCGAAATTGACGCCCACAACTATCGCTACTACGTGCTCGACGAGCCGAGCGTTC CTGACGCCGAGTACGACCGCCTGTTTAACGAGCTCAAGGCGCTCGAAGCAGAGCACCCGGAACTGGTGACGCCCGAGTCGCCAACCCAGCGGGTTGGAGG AGCGGCGCTCGCGGCATTCGGTCAGGTACGCCACGAAGTGCCGATGCTGAGCCTGGGCAACGCCTTCGATGAGCAGGATCTGCTCGACTTCGATCGTCGT GTGCGCGAAGGACTGGATTTGCCGGCGGGCGACCTGTTCAGCGACGGCGCTGTGGTCGAGTACAGCTGCGAACCCAAGCTGGACGGCCTGGCGGTCAGCC TGCTGTATGAGAACGGCCATCTGGTGCGCGGCGCCACCCGCGGTGACGGCAGCACGGGTGAGGACATCAGCGCCAATGTACGCACCGTTCGCAACATTCC ATTGAAGCTGCATGGCACTGGCTGGCCGGCGGTGCTCGAGGTGCGCGGCGAGATCTACATGCCCAAGGCCGGCTTCGAAGCGCTGAATGCGAGGCAGCTG GAAAGCGGCGGCAAACCCTTCGCCAATCCCCGCAACGCCGCTGCTGGAAGCCTGCGTCAGCTGGATTCGAAGATCACCGCCAGTCGTCCGCTCGAACTTT GTGCCTACGGCGTTGGCCGCAGCGACGGCGAACTGCCGGGTACGCACATCGGTATTCTCCAGGCCTTGAAAGGTTGGGGTCTGCCCATCAGCCGTGAGCT GAAACTGGCCAAGGGCGTCGCCGAATGCCGCGCCTATTACGACGCCATCGGTGAAAAGCGCGACGCACTGCCGTATGAGATCGACGGTGTGGTGTTCAAG GTCAACGCAGTCGCTCAGCAGCGTGAGCTGGGCTTCCGGGCGCGCGAGCCGCGCTGGGCCATCGCCCACAAGTTTCCCGCGCGGGAGGAAATCACCGAGC TGCTGGACGTGGAGTTTCAGGTGGGGCGCACCGGCGCCATTACGCCGGTCGCGCGGCTGAAGCCTGTGCAGGTCGCCGGCGTGACGGTTTCGAACGCCAC GCTGCATAACATGGATGAGGTCGCGCGCCTGGGCGTGATGATCGGCGATACGGTTATTGTTCGCCGCGCCGGCGACGTTATTCCGCAGATTCTTGGCGTC ATCCCTGAGCGCCGCCCCGAGAACGCACGCCAGGTCCAAGTGCCTGAGCATTGCCCGGTCTGTGGCTCGGACGTTGAACGCACCCAATTGATCAAGCGCA GCAAGGGGAGGGAGTCGGTCAGCGAAGGCTCTATCTACCGTTGCGTCGGCCGTCTGGCCTGCCAGGCCCAGCTCAAACAGGCGATCATCCATTTCGTCTC GCGCCGGGCCATGGATATCGACGGTCTGGGCGACAAGATCGTTGAGCAACTCGTGGATACCGGATTGGTCGGCTCCCCGGCCGATCTGTACTGCCTGACG TTCGATCAGGTACTGGCGCTTGAAGGCTTCGCCGAAGTATCCAGCCGCAACCTGCTCAAATCCGTTGACGCCAGCCGCACACCGTCATTGGCGCGCTTCA TCTATGCCCTGGGCATTCCGGATGTCGGGGAGGGCACGGCCAAACTTCTGGCGCGGGCGCTGGGTTCCCTGGATCGCATCAGCCGGGCGTTACCGGATGT GCTGGTCTACCTGCCTGATATTGGATTGGAGGTCGCGCACGAGATCCACAGTTTCTTCGAAGATGACCATAACCAACTCGTCATCAAGCAGCTGCGCGAG CGTGGCGTGCAGCTGCAGGAGGAGGGCGAGGTTCATCCCGAGTTCGCCGCCTGCGCCACATTGGGCGAGCTGCTCGATAAGCTGAACATTCCCTTCATCG CCACCACTGGCGCCCAGCGCCTCGCGGATCGCTTCAGTAGTCTTGACGCCATCATTGAAGCCGACTGGCTGGACTTGCGTCAGGTCGAACGCCTCAACGA AAAGGCAGCACGTGCATTGCGTGACTACTTCAACGAGCCGGCCAATGCTAAACACGCCCGCATGATCGAAGCCCAGCTGCGCGAGTTCGGCATGCATTGG CAAAGCGAGCGAAAGGCGGCGGAAGGCCTGCCGCTGGCGGGGCAAACCTGGGTACTCACCGGCACGCTGGAAAGCATGAGCCGCGATGAGGCCAAAGCAA GGCTGGAGGCGTTGGGGGCAAAGGTTTCGGGTTCCGTTTCAGCCAAGACCAGCGTAGTGGTAGCTGGACCAGGAGCTGGGTCGAAGCTGGCAAAGGCCAA CGAGCTGGGCTTGGCGGTCAATGACGAGGATGCCTTCCTGGAGCGGCTCGCTGAACTTGAGCATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCAAACATCAGCTAGCGGCTTCGCACAGAAGACGATTCACTCACCCCAGACCACAGGCGGCACCGGCCCCGCTTTTGTGGGAGGCGCGCCCCGCGGCGA AGAAGTCATCCTGCCAGCGCAAAGCAAAGCTTCGCGCCGAGCGTAGCCCTCCTATCAATAGTAGCAGCGTGACTCCAGTCCTGTGGGAGGCGCGCCCTCG CGGCGAAAAGGCCTACCAGGCCCCTCCAAAAACCAAACTCGCCCGCACGGGCCTGCCTCCACCTCGCGGCCTTCTGTTCATACATTAAAGATTTCCACCC AACGTCCGAAAACCTTGCAGGCGGGCTCGCTTGTTTGCGGATTCGCCGGTGTCGTACAGGTTGTTTTCGGGGCTTGCAAAAAAATTTTCGAATGCCTCCT AAAGCTCACCGAAACGACGCCGATAAGCTAATCGAATGCGAACTCAATGGGTGCCTGGGCACAAGCCGGCCCGGAGTCGCAAGCTCAGGCAACCAAAGTA
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MPSAQTAAERIAELRGEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPTQRVGGAALAAFGQVRHEVPMLSLGNAFDEQDLLDFDRR VREGLDLPAGDLFSDGAVVEYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGTGWPAVLEVRGEIYMPKAGFEALNARQL ESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVGRSDGELPGTHIGILQALKGWGLPISRELKLAKGVAECRAYYDAIGEKRDALPYEIDGVVFK VNAVAQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVAGVTVSNATLHNMDEVARLGVMIGDTVIVRRAGDVIPQILGV IPERRPENARQVQVPEHCPVCGSDVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLVDTGLVGSPADLYCLT FDQVLALEGFAEVSSRNLLKSVDASRTPSLARFIYALGIPDVGEGTAKLLARALGSLDRISRALPDVLVYLPDIGLEVAHEIHSFFEDDHNQLVIKQLRE RGVQLQEEGEVHPEFAACATLGELLDKLNIPFIATTGAQRLADRFSSLDAIIEADWLDLRQVERLNEKAARALRDYFNEPANAKHARMIEAQLREFGMHW QSERKAAEGLPLAGQTWVLTGTLESMSRDEAKARLEALGAKVSGSVSAKTSVVVAGPGAGSKLAKANELGLAVNDEDAFLERLAELEH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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