Pseudomonas stutzeri A1501, PST_2808 (ruvB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05496
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009378 four-way junction helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05496
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00016
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00016
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05496
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psa03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00009 AAA - - 41 178 6.45762E-12
Hamap MF_00016 Holliday junction branch migration complex subunit RuvB [ruvB]. IPR004605 Holliday junction branch migration complex subunit RuvB 1 350 182.940659
PANTHER PTHR42848 - IPR004605 Holliday junction branch migration complex subunit RuvB 2 337 0.0
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 260 349 6.3E-37
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 22 183 7.0E-43
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 23 254 1.62E-51
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 260 333 2.67E-25
FunFam G3DSA:1.10.8.60:FF:000023 Holliday junction ATP-dependent DNA helicase RuvB - - 186 258 2.1E-33
Pfam PF05496 Holliday junction DNA helicase RuvB P-loop domain IPR008824 RuvB-like P-loop domain 23 181 1.6E-80
Pfam PF05491 RuvB C-terminal winged helix domain IPR008823 RuvB C-terminal winged helix domain 258 328 7.8E-26
FunFam G3DSA:3.40.50.300:FF:000073 Holliday junction ATP-dependent DNA helicase RuvB - - 22 183 4.1E-94
Gene3D G3DSA:1.10.8.60 - - - 185 259 5.6E-34
Pfam PF17864 RuvB AAA lid domain IPR041445 RuvB, AAA lid domain 184 257 7.5E-33
NCBIfam TIGR00635 JCVI: Holliday junction DNA helicase RuvB IPR004605 Holliday junction branch migration complex subunit RuvB 27 329 0.0
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 54 181 1.9E-12
FunFam G3DSA:1.10.10.10:FF:000086 Holliday junction ATP-dependent DNA helicase RuvB - - 260 336 1.7E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.