Pseudomonas stutzeri A1501, PST_1804

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13426 PAS domain IPR000014 PAS domain 163 267 2.0E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 137 266 2.97E-20
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 284 441 5.96E-51
SMART SM00052 duf2_2 IPR001633 EAL domain 450 695 2.5E-100
CDD cd01948 EAL IPR001633 EAL domain 456 693 1.41073E-103
SMART SM00086 pac_2 IPR001610 PAC motif 99 140 1.0
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 275 438 3.0E-44
Gene3D G3DSA:3.30.450.20 PAS domain - - 151 277 3.6E-23
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 279 436 6.6E-48
SMART SM00091 pas_2 IPR000014 PAS domain 22 93 0.16
SMART SM00267 duf1_3 IPR000160 GGDEF domain 268 440 2.0E-65
SMART SM00086 pac_2 IPR001610 PAC motif 226 268 0.0096
Pfam PF08447 PAS fold IPR013655 PAS fold-3 47 130 1.0E-15
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 278 452 1.7E-57
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 36 141 4.36E-16
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 456 700 4.84E-83
CDD cd00130 PAS IPR000014 PAS domain 161 265 2.86585E-5
Coils Coil Coil - - 444 464 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 22 138 6.0E-23
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 149 275 1.6E-14
CDD cd00130 PAS IPR000014 PAS domain 41 137 9.41457E-7
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 274 441 5.3E-41
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 108 701 0.0
SMART SM00091 pas_2 IPR000014 PAS domain 152 218 0.0011
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 453 705 3.5E-91
CDD cd01949 GGDEF IPR000160 GGDEF domain 280 438 1.31106E-61
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 45 142 2.8E-6
Pfam PF00563 EAL domain IPR001633 EAL domain 456 690 1.5E-66

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.