Pseudomonas stutzeri A1501, PST_0004 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01059
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00418 DNA topoisomerase II family signature - - 487 503 3.9E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 525 537 3.9E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 220 242 7.3E-74
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 701 804 3.0E-28
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 757 769 7.3E-74
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 418 532 2.88316E-78
Gene3D G3DSA:3.10.20.690 - - - 593 682 3.5E-26
FunFam G3DSA:3.30.230.10:FF:000005 DNA gyrase subunit B - - 220 392 2.0E-78
NCBIfam TIGR01059 JCVI: DNA gyrase subunit B IPR011557 DNA gyrase, subunit B 7 803 0.0
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 360 374 7.3E-74
SMART SM00433 topII5 IPR001241 DNA topoisomerase, type IIA 37 797 0.0
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 312 328 7.3E-74
PRINTS PR00418 DNA topoisomerase II family signature - - 114 128 3.9E-71
PANTHER PTHR45866 DNA GYRASE/TOPOISOMERASE SUBUNIT B - - 3 803 0.0
CDD cd00822 TopoII_Trans_DNA_gyrase - - 220 377 5.39927E-73
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 419 531 4.2E-18
FunFam G3DSA:3.40.50.670:FF:000005 DNA gyrase subunit B - - 391 591 2.2E-123
FunFam G3DSA:3.30.565.10:FF:000002 DNA gyrase subunit B - - 4 219 9.8E-96
CDD cd16928 HATPase_GyrB-like - - 38 216 2.87041E-105
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 470 479 7.3E-74
PRINTS PR00418 DNA topoisomerase II family signature - - 72 85 3.9E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 773 789 7.3E-74
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 733 793 1.5E-30
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 393 592 3.7E-80
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 33 176 3.5E-30
PRINTS PR00418 DNA topoisomerase II family signature - - 37 52 3.9E-71
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 220 392 3.0E-66
SUPERFAMILY SSF56719 Type II DNA topoisomerase IPR013760 DNA topoisomerase, type IIA-like domain superfamily 394 794 2.07E-87
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 34 174 2.6E-22
FunFam G3DSA:3.40.50.670:FF:000004 DNA gyrase subunit B - - 704 803 7.5E-50
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 196 209 7.3E-74
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 374 394 7.3E-74
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 7 218 1.57E-72
PRINTS PR00418 DNA topoisomerase II family signature - - 505 522 3.9E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 736 752 3.9E-71
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 4 804 101.728935
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 4 219 2.3E-93
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 181 196 7.3E-74
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 564 730 5.0E-55
PRINTS PR00418 DNA topoisomerase II family signature - - 420 434 3.9E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 7 17 7.3E-74
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 221 390 3.0E-56
PRINTS PR00418 DNA topoisomerase II family signature - - 268 281 3.9E-71
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 221 392 3.6E-58

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.