Pseudomonas aeruginosa AZPAE12145, NQ06_RS11300

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07660
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56935 Porins - - 134 883 1.34E-100
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 376 881 9.0E-46
Gene3D G3DSA:3.55.50.30 - - - 36 144 9.0E-25
FunFam G3DSA:2.40.170.20:FF:000043 Uncharacterized protein - - 285 883 0.0
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 65 116 3.8E-12
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 150 267 3.9E-23
CDD cd01347 ligand_gated_channel - - 153 883 1.17741E-81
Pfam PF07660 Secretin and TonB N terminus short domain IPR011662 Secretin/TonB, short N-terminal domain 67 115 7.5E-8
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 152 278 2.7E-30
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 285 883 3.6E-58
FunFam G3DSA:3.55.50.30:FF:000002 Probable TonB-dependent receptor - - 36 144 1.8E-33
PANTHER PTHR47234 - - - 1 883 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.