Pseudomonas aeruginosa PA7, PSPA7_5242

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other PA7 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1153 1400 5.1E-92
SMART SM00086 pac_2 IPR001610 PAC motif 798 840 0.003
CDD cd00130 PAS IPR000014 PAS domain 721 837 2.69052E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 276 412 1.7E-9
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1149 1403 1.6E-104
CDD cd01949 GGDEF IPR000160 GGDEF domain 974 1136 1.09876E-61
Pfam PF13426 PAS domain IPR000014 PAS domain 860 961 1.4E-16
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 968 1140 5.3E-45
SMART SM00091 pas_2 IPR000014 PAS domain 288 354 0.0096
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 576 707 8.0E-11
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 837 960 3.91E-22
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 844 1400 0.0
SMART SM00091 pas_2 IPR000014 PAS domain 848 915 6.1E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 702 838 5.17E-14
Pfam PF00563 EAL domain IPR001633 EAL domain 1154 1389 2.1E-77
Pfam PF00989 PAS fold IPR013767 PAS fold 713 837 3.4E-6
SMART SM00267 duf1_3 IPR000160 GGDEF domain 962 1138 2.1E-71
Pfam PF13188 PAS domain IPR000014 PAS domain 301 345 0.02
CDD cd00130 PAS IPR000014 PAS domain 857 959 1.72432E-9
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 978 1139 3.53E-50
SMART SM00086 pac_2 IPR001610 PAC motif 920 962 7.8E-6
CDD cd00130 PAS IPR000014 PAS domain 589 697 2.27458E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 564 698 5.8E-17
SMART SM00086 pac_2 IPR001610 PAC motif 657 700 0.0065
Gene3D G3DSA:3.30.450.20 PAS domain - - 851 973 2.0E-31
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 475 574 1.52E-5
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1149 1403 1.4E-106
SMART SM00091 pas_2 IPR000014 PAS domain 712 779 1.4
Gene3D G3DSA:3.30.450.20 PAS domain - - 572 698 4.9E-19
Gene3D G3DSA:3.30.450.20 PAS domain - - 710 850 7.8E-21
Pfam PF08447 PAS fold IPR013655 PAS fold-3 603 694 3.2E-14
FunFam G3DSA:3.30.450.20:FF:000172 Cyclic di-GMP phosphodiesterase Gmr - - 850 974 2.9E-83
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 973 1134 1.2E-51
SMART SM00052 duf2_2 IPR001633 EAL domain 1148 1394 4.5E-126
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 974 1144 2.3E-63
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 970 1136 1.5E-40
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 279 380 2.23E-8
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 708 847 1.4E-10
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 852 968 2.5E-18
CDD cd01948 EAL IPR001633 EAL domain 1154 1394 1.42612E-111
Gene3D G3DSA:3.30.450.20 PAS domain - - 414 571 1.8E-5
SMART SM00091 pas_2 IPR000014 PAS domain 579 648 1.9E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.