Pseudomonas aeruginosa PA7, PSPA7_5115

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa PA7
GCF_000017205.1|latest
Locus Tag
PSPA7_5115
Name
Replicon chromosome
Genomic location 5263597 - 5265033 (+ strand)

Cross-References

RefSeq YP_001350451.1
GI 152988329
Entrez 5354792
INSDC ABR85512.1
NCBI Locus Tag PSPA7_5115
UniParc UPI0000D72BE8
UniProtKB Acc A6VBL6
UniProtKB ID A6VBL6_PSEA7
UniRef100 UniRef100_A6VBL6
UniRef50 UniRef50_Q9HVS0
UniRef90 UniRef90_Q9HVS0

Product

Feature Type CDS
Coding Frame 1
Product Name
putative porin
Synonyms
Evidence for Translation
Charge (pH 7) -9.35
Kyte-Doolittle Hydrophobicity Value -0.464
Molecular Weight (kDa) 52228.3
Isoelectric Point (pI) 5.44

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3SYB MEMBRANE PROTEIN 07/16/11 Crystal structure of Pseudomonas aeruginosa OccD3 (OpdP) Pseudomonas aeruginosa 2.7 X-RAY DIFFRACTION 99.8

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 17 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004088 (487 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPA7_5115
Search term: putative porin

Human Homologs

References

No references are associated with this feature.