Pseudomonas fluorescens AU6308, MZ32_RS00040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF16448 | LapD/MoxY periplasmic domain | IPR032244 | LapD/MoxY, periplasmic domain | 23 | 145 | 4.6E-38 |
| Gene3D | G3DSA:6.20.270.20 | LapD/MoxY periplasmic domain | IPR042461 | LapD/MoxY periplasmic domain, C-terminal | 101 | 151 | 1.9E-22 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 233 | 394 | 5.2E-17 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 168 | 219 | 6.8E-6 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 225 | 398 | 3.2E-22 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 416 | 647 | 4.58E-53 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 171 | 223 | 9.4E-6 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 417 | 644 | 9.3E-54 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 237 | 392 | 5.3E-24 |
| Gene3D | G3DSA:3.30.110.200 | - | - | - | 22 | 99 | 8.1E-32 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 409 | 646 | 3.4E-34 |
| CDD | cd06225 | HAMP | - | - | 175 | 218 | 0.00445717 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 241 | 399 | 5.65E-23 |
| Coils | Coil | Coil | - | - | 208 | 235 | - |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 237 | 377 | 1.01837E-19 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 417 | 646 | 6.35344E-59 |
| Coils | Coil | Coil | - | - | 331 | 351 | - |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 407 | 648 | 2.7E-65 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 208 | 646 | 1.7E-79 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 219 | 399 | 1.0E-37 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.