Pseudomonas aeruginosa UCBPP-PA14, PA14_44630 (dnaX)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1532
 ECO:0000249
sequence similarity evidence used in automatic assertion		 15611049
Cellular Component GO:0043846 DNA polymerase III, clamp loader complex
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1532
 ECO:0000249
sequence similarity evidence used in automatic assertion		 15611049
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02397
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009360 DNA polymerase III complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02397
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00300
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48019
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48019
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 41 59 2.0E-5
CDD cd00009 AAA - - 19 170 5.61285E-14
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 29 222 2.52E-58
FunFam G3DSA:3.30.300.150:FF:000002 DNA polymerase III subunit gamma/tau - - 557 679 4.8E-68
MobiDBLite mobidb-lite consensus disorder prediction - - 654 670 -
MobiDBLite mobidb-lite consensus disorder prediction - - 443 492 -
FunFam G3DSA:3.40.50.300:FF:000014 DNA polymerase III subunit gamma/tau - - 1 177 6.7E-86
Pfam PF13177 DNA polymerase III, delta subunit - - 20 178 6.4E-45
Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha IPR021029 DNA polymerase III, tau subunit, domain V 576 691 2.2E-17
PANTHER PTHR11669 REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT - - 7 290 5.2E-66
NCBIfam TIGR02397 JCVI: DNA polymerase III subunit gamma/tau IPR012763 DNA polymerase III, subunit gamma/ tau, N-terminal 3 355 2.7E-130
FunFam G3DSA:1.10.8.60:FF:000013 DNA polymerase III subunit gamma/tau - - 179 242 8.9E-25
Gene3D G3DSA:3.30.300.150 DNA polymerase III, tau subunit, domain V IPR038249 DNA polymerase III, tau subunit, domain V superfamily 566 679 3.2E-31
Gene3D G3DSA:1.10.8.60 - - - 180 242 3.9E-22
Gene3D G3DSA:1.20.272.10 - - - 243 361 1.6E-40
FunFam G3DSA:1.20.272.10:FF:000003 DNA polymerase III subunit gamma/tau - - 243 361 6.1E-48
MobiDBLite mobidb-lite consensus disorder prediction - - 517 538 -
MobiDBLite mobidb-lite consensus disorder prediction - - 514 538 -
Pfam PF12169 DNA polymerase III subunits gamma and tau domain III IPR022754 DNA polymerase III, gamma subunit, domain III 233 359 5.1E-31
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 124 142 2.0E-5
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 177 8.6E-67
MobiDBLite mobidb-lite consensus disorder prediction - - 648 673 -
MobiDBLite mobidb-lite consensus disorder prediction - - 463 481 -
SUPERFAMILY SSF48019 post-AAA+ oligomerization domain-like IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal 243 362 1.45E-33
CDD cd18137 HLD_clamp_pol_III_gamma_tau IPR045085 DNA polymerase III, subunit gamma/tau, helical lid domain 178 242 1.0157E-25
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 37 179 7.6E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.