Pseudomonas aeruginosa UCBPP-PA14, PA14_16040 (xerD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015074 DNA integration
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02899
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02899
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009009 site-specific recombinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_01807 Tyrosine recombinase XerD [xerD]. IPR011932 Tyrosine recombinase XerD 5 298 65.879898
PANTHER PTHR30629 PROPHAGE INTEGRASE - - 49 282 5.3E-13
Pfam PF00589 Phage integrase family IPR002104 Integrase, catalytic domain 113 283 5.5E-52
SUPERFAMILY SSF56349 DNA breaking-rejoining enzymes IPR011010 DNA breaking-rejoining enzyme, catalytic core 8 288 2.21E-59
Pfam PF02899 Phage integrase, N-terminal SAM-like domain IPR004107 Integrase, SAM-like, N-terminal 9 90 3.5E-19
Gene3D G3DSA:1.10.150.130 - IPR010998 Integrase/recombinase, N-terminal 6 99 1.0E-25
Hamap MF_01808 Tyrosine recombinase XerC [xerC]. IPR023009 Tyrosine recombinase XerC/XerD 7 298 57.571285
Gene3D G3DSA:1.10.443.10 Intergrase catalytic core IPR013762 Integrase-like, catalytic domain superfamily 112 292 9.3E-58
NCBIfam TIGR02225 JCVI: site-specific tyrosine recombinase XerD IPR011932 Tyrosine recombinase XerD 11 297 6.3E-119
CDD cd00798 INT_XerDC_C - - 116 287 9.12758E-96

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.