Pseudomonas simiae WCS417, PS417_RS07500

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas simiae strain WCS417. [Details]
DNA Sequence Upstream of Gene
TCAGCGTGATCTGCCGCGACGCCGCCGGCTTCAAGGGCCCGGCTTTGTTGCAAAATATTCTGGAAAGCGGCCTGCGCTTCGGCGAGATGGATATTTTCCA CCGTCACGAAAGCATGGCGGGTAACGGCGAAGTGCTGTTCTCCATGGCCAACGCGGTCAAGCCAGGCACCTTCGATCTGGACGATATCGACCTGTTCAGC ACCCCGGCGGTGAGCTTCTTCCTCGGCCTGCCAGGTCCGCGTCACCCGAAACAGGCTTTCGACGTGATGGTGGCCGCAGCCCGCAAGCTGTCCCAGGAAC TGAACGGCGAACTCAAGGACGACCAACGCAGCGTCCTCACCGCCCAGACCATCGAGCATTACCGTCAGCGCATCGTCGAGTTCGAGCGTCGCGCCCTGAC ACAGAAACGCTGAGGTTCGATCTTAAGCGTTGTCTGTAGAATCCGTGCACTAACATATTGAGCAGCTTCGGCTGCTCTTTTGCTTTATGAGAGAACACCC
DNA Sequence for Gene
>PS417_RS07500
ATGACCGCCGCCCACACCCGCATCCTCGAACTGCGCGCTGAACTGGATCAGCACAACTACCGTTACCACGTCCTCGACGAGCCGAGCATTCCGGACGCCG AGTACGACCGTCTGTTCCATGAGCTCAAGGCCCTGGAAGCCGAGCATCCGGACCTGGTCACGCGCGATTCTCCGACGCAGCGGGTCGGCAGTGCGGCGTT GTCGGCGTTCACCCAGGTCAAGCATGAGATCCCCATGCTCAGCCTTGGCAACGCTTTTGACGAAACCACCATGCTGGAATTCGATCGCCGGGTCACCGAA GGCCTCGACCTGCCGGCCGGCGATCTGTTTGGCGGTGGCGCGGCGGTGGAGTACAGCTGCGAACCGAAGCTGGATGGCCTGGCGGTCAGCCTGCTGTATC AGGACGGCGAACTGGTTCGCGGCGCCACCCGTGGCGACGGCACCACCGGCGAAGACATCAGCGTCAACGTGCGCACCGTGCGCAATATTCCGTTGAAGCT GCACGGCAGCGGTTGGCCGGCGAACCTGGAAGTGCGCGGTGAAGTGTTCATGTCCAAGGCCGGTTTCGAACGGCTCAACGCCTCGCAGCTGGAAGTCGGC GGCAAGACCTTCGCCAACCCGCGCAACGCCGCTGCCGGTAGTTTGCGTCAGCTGGATTCGAAGATCACCGCCAGCCGTCCGCTGGAATTCTGCTGCTACG GTGTGACCACTGATATCAGCGACACCCATATCGGCAACCTGCAACAGTTGCAGAAATGGGGCATGCCCATCAGCCGTGAGTTGAAGCTGGCAAAGGGCAT CCAGGATTGCCTGGAGTACTACCGCGATATCGGCGAGCGGCGTAACAGCCTGCCATATGAGATCGACGGCGTGGTGTTCAAGGTCAACAGCATCGCTTCC CAGCGAGAACTGGGCTTCCGCGCCCGTGAACCGCGCTGGGCCATCGCGCATAAATTCCCGGCCATGGAGGAGCTGACTGAGCTGCTAGACGTGGAATTCC AGGTTGGTCGTACTGGCGCCGTCACGCCGGTGGCACGCCTCAAGCCGGTCAAGGTCGCGGGTGTCACCGTGTCCAACGCGACCCTGCACAACATGGATGA AGTGGCGCGCCTGGGCGTGATGATCGGCGATACCGTGATCATCCGCCGCGCCGGGGATGTGATCCCGCAGGTGGTCTCGGTGGTGCTTGAGCGTCGTCCG GAAAACGCCCGTGCGGTGCCGATCCCACAGAGCTGCCCGGTGTGTGGTTCCCACGTGGAGCGTACGCAACTGGTCAAACGCAGCAAGGGCAAGGAAACCG TCAGCGAGGGCGCGGTGTACCGTTGCGTCGGGCGTCTGGCCTGTGGCGCGCAGCTCAAGCAGGCGATTATCCATTTCGTCTCACGCCGCGCCATGGACAT TGACGGCCTGGGCGACAAAACCATCGAACAACTGGTGGATGAAAAACTCATCGGCTCGCCGGCCGACCTCTACAAACTCAAGTACGAACACATCATCGAC CTGGAAGGCTTTGCCGACATTTCCAGCAAGAAGCTGATCACCGCCATCGAAAACAGCAAATCCCCGACCCTGGCGCGCTTTATCTATGCGCTGGGCATTC CTGATGTAGGCGAGGAGACCGCCAAGGTGCTGGCGCGCTCCCTGGCCTCCCTGGAGCGCGTGCAGAAGGCCTTGCCCGAAGTGCTGACGTACTTGCCGGA CGTGGGCCTGGAAGTGGCGCATGAGATCCACAGTTTCTTTGAAGACAGCCATAACCAAGACGTGATCGGCGCGCTGCTGTCGCCGGAAGAGTGCGGCCTG CAATTGCAGGATCAGGGTGACCTGAGTGCCGAATTCGCCGCCAGCACCACCTTGGGCGGGTTGCTCGACAAGCTGCACGTACCGAGCGTCGGCCCGGGCG CCGCGCAAAAGCTGGCGGACAAGTTCGTCACCCTCGAAGGCGTAATCAAGGCCGACTGGCTGGACATGCGCCAGGCCCTGCCGGAGAAACAGGCCAAGGC CGTGCGCGAGTTCTTCGATAATGCCGACAACGCCCACCGCGCCCTGGCCATCGAGCAGCAGCTCAAAGACTTCGGTATGCATTGGGACAGCGAGAAGAAG GTGGTCGAAGGCTTGCCCGAAGCCGGGCACACCTGGGTACTCACCGGTTCGCTGGAGTTGATGAGCCGCGACGTGGCCAAGGAGAAGCTCGAAAGCCTGG GCGCCAAGGTGGCGGGATCTGTGTCGGCGAAGACCCACTGCGTGGTGGCTGGGCCGGGCGCCGGTTCCAAGCTGACCAAGGCCAGCGAATTGGGCTTGAA GGTGCTGGATGAAGAAGCCTTCGTCGCCTTCCTCGCCAGGAACAACATCAAGGTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCGATCCCACTGTAGGAGCGAGCTTGCTCGCGAAAAACTTGAGAGCGTCTCGATAAACCAGGAACGCTGCGTCATCGTTGACGTTCTTCGCGAGCAAGC TCGCTCCCACAGAAGCCATGTTGAACGATCGGTAGCGGGAAATGATCTAGTCTCAGTCACCCAGGGAGAGATCGCCATGTTCCGCTACTTCGAGCAACTC AGTTCGCGCATCGCTGCACCGTTCGTAGCCGGCACATCCCGCGACAGCAAAGTGTGGCAGTGCCGTTGCGGCCAATCGCTGTTCTTTCGCAACAGTCAAT GCCTGGCCTGCCAGGCGCTGCTCGGCTACCAAGCCCAACAAAGTCGTCTCGCCTCCCTGCAACCCGGCCCCGTCGAAGGCACCTGGCTGCAGGACGGCAA CCTCGACGCCGGTGCCTTCCGCCGCTGCGCCAACCTCGATACACCGGCCGCTTGCAACTGGCTGATCCCGGCCCACAGCACCGCGCCGCTGTGCGTGGCG
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQRVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTE GLDLPAGDLFGGGAAVEYSCEPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPANLEVRGEVFMSKAGFERLNASQLEVG GKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDISDTHIGNLQQLQKWGMPISRELKLAKGIQDCLEYYRDIGERRNSLPYEIDGVVFKVNSIAS QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVSVVLERRP ENARAVPIPQSCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVDEKLIGSPADLYKLKYEHIID LEGFADISSKKLITAIENSKSPTLARFIYALGIPDVGEETAKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPEECGL QLQDQGDLSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQALPEKQAKAVREFFDNADNAHRALAIEQQLKDFGMHWDSEKK VVEGLPEAGHTWVLTGSLELMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKASELGLKVLDEEAFVAFLARNNIKV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site