Pseudomonas simiae WCS417, PS417_RS07500

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03119
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00532
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 323 403 1.64E-28
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 692 780 6.6E-21
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 65 319 8.3E-105
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 707 781 3.49E-16
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 11 605 0.0
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 2 778 50.769924
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 412 450 1.6E-10
Gene3D G3DSA:1.10.150.20 - - - 521 603 1.8E-21
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 528 547 140.0
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 64 7.5E-28
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 321 394 9.0E-35
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 3 320 2.34E-115
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 462 481 4.0
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 326 402 3.6E-35
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 610 783 2.8E-26
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 6 321 0.0
SMART SM00292 BRCT_7 IPR001357 BRCT domain 704 781 2.2E-7
Gene3D G3DSA:1.10.150.20 - - - 446 520 3.6E-27
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 408 593 6.3E-49
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 706 775 3.1E-8
CDD cd17748 BRCT_DNA_ligase_like - - 708 774 3.1173E-22
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 3 464 0.0
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 321 394 7.4E-33
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 446 521 2.3E-29
Gene3D G3DSA:6.20.10.30 - - - 395 445 2.7E-12
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 618 0.0
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 65 319 5.8E-98
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 4 321 1.0E-124
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 1 64 1.5E-28
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 610 695 1.52E-9
Gene3D G3DSA:1.10.150.20 - - - 620 675 1.6E-6
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 526 589 1.5E-19
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 17 759 1.7E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.