Pseudomonas simiae WCS417, PS417_RS21205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain WCS417. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCCAGTCCGTGTCTGAATTGCGGTGCCTGCTGTTCACACTTTCGTGTGTCTTTCTTTTGGGGAGAGTGCGCCTCGTCGGGGGGCACGGTGCCCGATG ACCTGGTGGTGCAGATCAACCCCACCCGCGTGGCGATGATCGGCACCGACCAGAAGCCGGCGCGCTGTTGCAGCCTTGAAGGAGAAGTGGGCCAAGGCAC CCGCTGCACGATTTACGAACAACGCTCCAGTGTGTGCCGCGAATTCGAGGCCTCCTGGTATGGGGGCGAACACAACGCCGATTGCGATGCAGCCCGCGCC GCGTTTGGCCTGGCGCCTCTGGAAGCACCGTTCGAACTGGACCTGCCCATCAGCGCTTAGCATCAAACGCTATGGGTGGCATGCCAAAATCGTAGAGAAT CAAAGTGCCATTACTCCTTGGCGAATTCTCCTAGCCGTCTACACTCGTCCTCATTGGTCATCGCCGTAGGCAGTGACGTGACGCTATGACGGGACATGCT
|
|
| DNA Sequence for Gene |
>PS417_RS21205
ATGGAATGGCTGGGTCTGCATTTTTTTACCGAACTTCCAGCGAGCGGGCACTTATTACTCAATTGCAGTCATAACCCCTTCCTGGTGTTGCTCGCCTACC TGGTTGCGTGTGCGGCGGGCTTTGGCACACTGGACATGGCCGAACGCGTCGGCCATGTCGAAGACCCTACCGCGCGGCGCCATTGGCGCTGGCTCGGTGC CGGTTGCCTGGCAGGCGGGATCTGGTCCACCCATTTCATCAGCATGCTGGCCTTCCAGGCCCCGATTGTGATCCATTACGAACTGTTCATGACGTTCGCA TCCTTGCTGATCGCGCTGATCGCGTCGTTGATCGCCATGCAAACCCTCAGTCACTCCAACCTGCGCTTTCACCAGTATTTGCTGGCGTCCATCTGGATGG GCATCGGCATCGCCTTGATGCATTACGTTGGCATGTCGGCCATGCGCTCCCAGGCCCAGATGTATTTCGATTCGGGACTGTTCCTGGCCTCGGTTGGCAT TGCCATGGGTGCCAGCCTCGCGGCGTTGTTGCTGTCGAGTTACCTGCGCACGGGCACGGGCGTGTTCCATCAACTGCTCAAATACGCCGCCAGCCTGGTC TTGGGCGCGGGGATCCTGAGCATGCATTTTACGGGCATGGCCGCTCTGCAATTAATCGTCCCCACCGGCGCTGACCTCTCACTGGCAGTGGATAACAACC CCATTCAACTGGGCCTGTCGGTGGCCGTCATCACCCTGCTGGTGATCGGCAGCAGCATCAGCGCCGCTCTGGCCGACAAGAAACTGCAGCACAAGGAACG TGACCTGCGCCGGGTCAATGCACTGCTCAGCGAACTGGACCAGGCTCGCGCCTCGCTGCAACAAGTAGCCCATTACGACGCCCTGACCAGCCTGCTCAAT CGCCGAGGGTTCAACCAGATTTTTGCGGAGAAGCTCGCCGAAAAAACCGCCTCCAACGGCATGATGGCCGTGATATTCCTCGATATTGATCACTTCAAGC GCATCAATGACAGCCTCGGGCATGACGCCGGCGACCAGTTACTCAGCGTGCTGGCCGGGCATATCAAGGGCTCGGTGCGCAGCCACGCGGATGTGGTCGC ACGGTTTGGCGGCGATGAGTTTTGCATCCTGATCAGCATTCACCACCGCGACGAAGCCCGGCACCTGGCCCAGCGCATCATGCAACAGATGAAAGAGCCC ATCGAATTGGCCGGCCGACGCATGGTGATGACCACTAGCATTGGTATCAGCCTGTTCCCCGACGACGGCCTGACTTGCGAAGAACTGCTGAAAACCGCCG ATCTGGCGCTGTACCAGTCCAAGGATGCCGGGCGCAACAATCTCAACTTTTTCAGTTCCAACCTGAAAACTCGCGCCTTCCTCGAACTGCAACTGGAAGA GGAATTACGCGGAGCGCTGCGCACCCATAACCAACTGGTGTTGTTCTATCAACCGATCTTCGACATGAAATTGGGCAAGGTCACGCGGCTCGAAGCCCTA GTGCGCTGGCAACATCCACAGCACGGCTTGCTGGCCCCGGACCGCTTTATCGGCATCGCCGAAAGCAACGGCCTGATTGCCGAACTGGACCACTGGGTGT TGCGCCAAGCCTGTCATGACCTGAGCCTGCTGGCTGACCGCGGCTACACCGACTTGACCATGTCAGTGAACTGCTCGGCCCTTAACCTGGCGCGCGATGA GCTGGCGGATGAAATCGAAGACGCGTTGCGCTTCAGCGGGATCGGCGCCAACCGCCTGGAGCTGGAAGTCACCGAAAACGCACTGATGGGCAACATCAGC AGCACCTTGGCGTTGCTGCGGCAGATCCGCGCGCTGGGCGTGTCGCTGGCCATCGACGACTTCGGCACGGGCTACTCGTCCCTCGCTTATCTCAAACGCT TGCCACTCAACACCCTGAAGATAGACCGCTCGTTTATCCAGGACATTCCCAAGTCCACCGCCGATATCGAGATCGTCCAGGCGGTGATCGGCATGGCTCA CACCCTGCACTTGCAGGTGGTGACCGAAGGCGTGGAAACCCAGGCCCAATTCGAGGTGCTACTCAAGCATGGCTGCGATTTCGTGCAGGGTTACCTGCTA AGTCCGGCGGTGCCGGCCAGTGAGATCATCGGCGTGATGCAGGGCATCAACCAGCGCAACCCTCTCCCTGCGCACAGAGGGGTGGGCAGCAAGGACAGCA GTTCGACGAAAGACCCCTCCCCAAACCGTGGCAGCTCCACGTCGATCGTCAGGCCAATTCGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGTCGAATCCTTGGCATTTAGCCATCATTTGCCTAAAGAACCCCGACAAACGGCCGATTCATCAGAGTCCGGCCAGGTTTTCCCTGAAAACACTCGGGTT TAGCCCACTCGCCCAGGACAAGGACGCGCAGTAAAGTCGCGAACTCCCACTCCGTGATGGCTACTTGATACTCTTTAGCCGTCCGCCCAGGCACATGGCG CACAATGACCTCTAAAAATAACTCTGCCACCCTGGTATCCGACGTGTTGCCCCCAGCGCCTGCGGACAAACCCTCAGGTTCAACGTCATTGAGCACCACC CGCCCGTCGGCCACCCAGCAATACCTGTACTTCACCGAAACCAATACCGACCGTATCCTCGACAACCTCGACGGCCTGCGCGACATGGTGTTCCCGCGCC CGCCCCACTTGGAAGGCGACACCGACCCGCGCAACGAGCAGGAATTTCCCTCGGTATGCCTGATCGGCCTGGGCCGCTGCGGTTCGAACATCGCACTGGA
|
|
| Amino Acid Sequence |
>diguanylate phosphodiesterase
MEWLGLHFFTELPASGHLLLNCSHNPFLVLLAYLVACAAGFGTLDMAERVGHVEDPTARRHWRWLGAGCLAGGIWSTHFISMLAFQAPIVIHYELFMTFA SLLIALIASLIAMQTLSHSNLRFHQYLLASIWMGIGIALMHYVGMSAMRSQAQMYFDSGLFLASVGIAMGASLAALLLSSYLRTGTGVFHQLLKYAASLV LGAGILSMHFTGMAALQLIVPTGADLSLAVDNNPIQLGLSVAVITLLVIGSSISAALADKKLQHKERDLRRVNALLSELDQARASLQQVAHYDALTSLLN RRGFNQIFAEKLAEKTASNGMMAVIFLDIDHFKRINDSLGHDAGDQLLSVLAGHIKGSVRSHADVVARFGGDEFCILISIHHRDEARHLAQRIMQQMKEP IELAGRRMVMTTSIGISLFPDDGLTCEELLKTADLALYQSKDAGRNNLNFFSSNLKTRAFLELQLEEELRGALRTHNQLVLFYQPIFDMKLGKVTRLEAL VRWQHPQHGLLAPDRFIGIAESNGLIAELDHWVLRQACHDLSLLADRGYTDLTMSVNCSALNLARDELADEIEDALRFSGIGANRLELEVTENALMGNIS STLALLRQIRALGVSLAIDDFGTGYSSLAYLKRLPLNTLKIDRSFIQDIPKSTADIEIVQAVIGMAHTLHLQVVTEGVETQAQFEVLLKHGCDFVQGYLL SPAVPASEIIGVMQGINQRNPLPAHRGVGSKDSSSTKDPSPNRGSSTSIVRPIR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|