Pseudomonas simiae WCS417, PS417_RS21205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 290 | 447 | 6.9E-47 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 286 | 449 | 5.0E-46 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 73 | 126 | 7.2E-11 |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 202 | 253 | 1.8E-7 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 461 | 708 | 1.4E-107 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 470 | 708 | 6.6416E-108 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 291 | 446 | 9.60018E-60 |
| Coils | Coil | Coil | - | - | 262 | 282 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 729 | 754 | - |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 279 | 451 | 8.2E-61 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 467 | 702 | 9.2E-74 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 295 | 453 | 2.75E-47 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 265 | 711 | 0.0 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 468 | 717 | 7.85E-86 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 462 | 719 | 3.7E-96 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 721 | 754 | - |
| Pfam | PF03707 | Bacterial signalling protein N terminal repeat | IPR005330 | MHYT domain | 134 | 184 | 1.8E-11 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 279 | 453 | 2.4E-55 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 285 | 452 | 2.7E-44 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 462 | 718 | 2.1E-90 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.