Pseudomonas syringae pv. syringae B728a, Psyr_2485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B728a chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGTATCCTCTACGAAAGCTACATTCATCCGCTGACGATCCTCTCGACGCTTCCGTCCGCAGGGGTTGGCGCATTGCTGACGATCTATGTAC TGGGCAGCGAATTCAGTCTGATCTCCCTGTTGGGGTTGTTCCTGCTGATCGGCGTGGTCAAGAAAAACGCGATCATGATGATCGACCTTGCCTTGCATCT GGAACGCGAACAGGGAATGACGCCGCAAGAGTCGATCCGCAGTGCCTGCCTGCAGCGTCTGCGGCCCATTCTGATGACCACGATGGCCGCCATCCTGGGG GCTTTGCCGCTGCTGCTGAGCACCGCCGAAGGCGCTGAAATGCGCAAGCCGCTGGGCTTGACCATCATCGGCGGTCTGATCTTCAGTCAGGTCCTGACCC TTTACACCACTCCGGTGGTTTACCTTTATCTCGACCGTCTGCGCCATCGTTACAACAAATGGCGTGGCGTGCGCACCGATGCTGCTCTGGAAACTCCGCT
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| DNA Sequence for Gene |
>Psyr_2485
ATGACCGAACGCCTGGCATTCACCTCCCGCCCGACAGGGCTGATTCGTCCATTCGCGCTGGGGCTTTGTGTGGTGCTGCTCAGCGCCTGCGCTGTGGGTC CGGATTACCAGAAGCCGTCCATGGCCGCACCCGCGCAGTTCAAGGCTGCGCAGGGCTGGCGTACGGCGACGCCGAGTGACGGGATGGGCAAAGGTGCGTG GTGGGAGGTGTACAAGGACCCGCAACTGAACGCGCTGGTCGAGCGCCTTAACACCTCCAACCAGACCGTCGCCCAGTACGATGCGCAGTATCGACAGGCA CAGACACTGGTGCGCAGCTCCAGGGCTGCATTCCTGCCTACGCTTGACCTGACAACCGGCAAAACCCGCTCGGGGCAGGGCACAGGCACGTCGAATAGCG GCACGAGTGCCTCGGGGATTCGCAACAGTTACAACGCGCAACTGGGCGTCAGTTGGGAGGCCGATGTCTGGGGCAAGCTGCGTCGCGGGCTGGAGGCTGA CACCGCCAATGCTCAGGCAAGTCTTGCGGACCTGGCCGCGATGCGTCTGAGTCTGCAATCGGAGCTGGTACAGAATTACCTGCAATTGCGCGTGATCGAT GAACAAAAACGCCTGCTCGAATCCACAGTGGATGCCTATCAGCGCTCCCTGACGCTGACGCAGAACCAGTACCGGGCCGGTATCTCCGGAAGTGATGCTG TCGCGCAGGCGCAGACGCAGTTGAAAAGCACCCAGGCCGATCTGATCGATCTGGCCTGGCAGCGTGCGCAATTCGAGAATGCCATCGCGGTACTGATGGG CATGGCACCGGCAGACTTCAATCTGCCCGCCAGCACCTCGATTCCGCAGTTGCCGCAGATCCCGCCAGGCCTGCCTTCGCAGCTGCTCGAACGCCGACCT GACATTGCCGCAGCCGAGCGCTCGGTGATGGGCGCCAATGCCAACATCGGCGTCGCCAGGGCCGCTTACTACCCGGACTTCACGCTGAGCATGAGCGGCG GATACAGTAGCAGTACCTTTGCCAACTGGATCAGCCTGCCCAACCGCTTCTGGTCGGTAGGCCCGCAGCTGGCGCTGACCCTGTTCGACGGCGGCAGGCG CTCGGCCGAGGTTGATCGTACCGAGGCCGTGTATGACCAGACTGTTGCCCAGTACCGGCAGACCGTGCTGAACGGTTTTCAGGAGGTCGAGAACTATCTG GTTCAGCTCAAGGTATACGAGCAGGAGGCTGCGGTGCGCCAGGAAGCGCTGGTCTCGGCTCGTGATTCGCTGCGCCTGACCAACAATCAATACAAGGCCG GGCTGATCGGTTATCTGGACGTCGTCAATGTTCAGGCGACTGCCTTGAGCAACGAACGCAGTGTGCTCAGCGTGCTGCAAAGCCGGTTGATTGCCAGCGT TCAATTGATCGCCGCACTGGGCGGGGGCTGGGATGCCGAAACAGGTTTGACGCTCCGGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTATTTCGGGTTCAGAACGCAGATTTTCAGTGGAACTGTTCGCAGTAAACGAAAAAATAATAGCTATTCGCCAGCTTTGCGACCAAGTGCCGCGACATTC GGCCGCTAATGCGTACAATCACCCGCACAAGATCGGCATGGACGCGCTCATTGGTTTCCAGGTGCGTTTATGTTGATTGGCAGCTACATCCCCTCACTCG TCGTCATCTCGATTCTCGTCGCTATTCTTGCCGCCTATACGGCCCTCGATCTGGTTGGCCGCATCGTTTCGGCCAGGGGCCGTGCCGTTCACCTATGGAT CGCGGGAGGCGCTGTCGCGATGGGCGTCGGCACCTGGTCGACGCATTTCATCGGTATGCTGGCGTTCGTATTGCCCATCGACCTGGGCTACGACGTGCCA CTGGTGCTGCTTTCGCTGTTGATCGCCATCGGCTTTTCAGGGTTCGCCCTGTGGCTCGCCACTCTGCCGCGATTGCCGGCACTGCAACTGAGCCTGGGGT
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| Amino Acid Sequence |
>RND efflux system, outer membrane lipoprotein, NodT
MTERLAFTSRPTGLIRPFALGLCVVLLSACAVGPDYQKPSMAAPAQFKAAQGWRTATPSDGMGKGAWWEVYKDPQLNALVERLNTSNQTVAQYDAQYRQA QTLVRSSRAAFLPTLDLTTGKTRSGQGTGTSNSGTSASGIRNSYNAQLGVSWEADVWGKLRRGLEADTANAQASLADLAAMRLSLQSELVQNYLQLRVID EQKRLLESTVDAYQRSLTLTQNQYRAGISGSDAVAQAQTQLKSTQADLIDLAWQRAQFENAIAVLMGMAPADFNLPASTSIPQLPQIPPGLPSQLLERRP DIAAAERSVMGANANIGVARAAYYPDFTLSMSGGYSSSTFANWISLPNRFWSVGPQLALTLFDGGRRSAEVDRTEAVYDQTVAQYRQTVLNGFQEVENYL VQLKVYEQEAAVRQEALVSARDSLRLTNNQYKAGLIGYLDVVNVQATALSNERSVLSVLQSRLIASVQLIAALGGGWDAETGLTLRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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