Pseudomonas syringae pv. syringae B728a, Psyr_1070
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B728a chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGATCGAGCAGCAGCGCGACAGCGGCATCGACCCGGCACGAATCTTCCTGGCCGGCTTTTCCCAGGGTGGCGCGGTGGTCTTGCATGCCGGCTACCGC CGCTGGCAGGGTCCGTTGGGCGGCGTACTCGCGCTGTCCACTTATGCCCCTACATTCAGCAACGAGATGACCCTGTCAGCGAGTCAGCAACGCATCCCGG CCTACTGCCTGCACGGCAAGCACGACGCGGTGGTGCCTTATCCGATGGGTCGCGCCGTCTACGACCATCTCACCGCCCAGGGTGTAACCGTTGAATGGCA GGAATACCCAATGGAGCATCAAGTGTTACCGGAGGAAATTCGCGACATCGGCGTCTGGCTGGCTGAAAGGCTTCGCTGAAGCGCTCTGAACCCCTTGCGA CGGACCGCTTTTGTAGCTCGCCATGGATGGCACTACGCCGAGCACGGTTCTTGCTTTACACTGCTCGGCGTACATTCCTTAACCAATTGATGAGATGACC
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| DNA Sequence for Gene |
>Psyr_1070
GTGCTCAAAGCACTTAAAAAGATGTTCGGTAAGAGCGAGGCTGAGCAGCCTGCGCCTACTCCGATAACCTCTATTCCCGCCTCTCCCGCTGCCACAGGCG ACACACCGGATCATGCTGTCCAGACTCAGGCTCTGGACACGACCAGCGAGCCCTCCAAAGCCAGAGCGCCGCGCACCGACAAGCCAAGGGCCGAGCGCCC GCGCCGCGAACGCGTAGCCAAACCGCCCGTCCCGGAATGGAAACTCGAGGATTTCGTCGTCGAACCCCAGGAAGGCAAGACCCGCTTCCATGACTTCAAC CTCGCGCCTGAACTGATGCACGCGATTCAGGACCTGGGCTTCCCGTACTGCACACCGATCCAGGCGGGCGTACTGGGCTTCACCCTCAAGGGCAAGGATG CGATCGGACGCGCCCAGACCGGCACCGGCAAGACCGCGGCGTTTCTGATCTCGATCATCGAGCAACTGACCCAGACGCCGCCGCCTGCAGAACGCTACAT GGGTGAGCCGCGCGCGCTGATCATCGCTCCGACCCGCGAGCTGGTGGTACAGATCGCCAAAGACGCCGCCGACCTGACCAAGTACACCAACCTGAACGTC ATGACCTTCGTCGGTGGCATGGACTTCGACAAGCAGCTCAAACAACTCGAAGCGCGCCACTGCGACATCCTGGTCGCCACGCCAGGCCGCCTGCTGGACT TCAACCAGCGCGGCGAAGTGCATCTGGATATGGTCGAAGTGATGGTCCTCGACGAAGCCGATCGCATGCTGGACATGGGCTTTATCCCGCAGGTACGCCA GATCATTCGTCAGACGCCGCACAAGGGTGAGCGCCAGACCCTGCTGTTCTCCGCGACTTTCACCGAAGACGTAATGAACCTCGCCAAACAGTGGACGACG GACCCTTCCATTGTCGAGATCGAATCGTTGAATGTTGCCAGCGACAACGTCGAACAGCATATCTATGCCGTCGCCGGTGCCGACAAGTACAAGCTGCTCT ACAACCTGGTGACCGACAACGGTTGGGAACGGGTCATGGTCTTCGCCAACCGCAAGGACGAAGTCCGACGCATCGAAGAGCGCCTGGTGCGCGATGGCGT GAACGCGGCGCAGCTGTCAGGCGATGTGCCTCAGCACAAGCGCATCAAAACCCTTGAAGGCTTCCGCGAAGGCAAGATCCGCGTGCTGGTCGCCACCGAT GTGGCCGGTCGCGGCATTCACATCGACGGCATCAGTCACGTGATCAACTTCACCCTGCCCGAAGTGCCGGACGATTACGTGCACCGCATCGGCCGTACCG GTCGCGCCGGCGCCGATGGCGTGTCGATCAGCTTTGCCGGTGAGGATGACTCTTACCAGTTGCCCGCCATCGAGGAAAAACTGGGCCGCAAGATCAGTTG CGAGACACCGCCGACTCATCTGCTCAGGGCTGTGGTGCGCAGCAACGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCTTACTTCCAGCGATCAGCCGCCTGGTGATCGCTGTGACGACCTTCGACCCAGCGCGTGCCTTCTGACGTGTTTTCACGCTTCCAGAACGGCGCGCGG GTCTTGAGGTAATCCATGACGAAATCACAGGCTTCGAACGCCGCCTGACGGTGCGCGCTGGCAACGCCGACGAACACGATCGGCTCGCCGGGCTCCAGCG CGCCAACCCGATGCAGTACGTCAACGCGTAGCAACGGCCAGCGCTGTTCGGCATCGGCAATGATTTTTGCCAGTGCCTTCTCGGTCATCCCCGGATAGTG CTCGAGAAACATGCCGGACACTTCACGCCCTTCATTGAAATCCCGAACATAGCCAACAAAACTGACCACCGCGCCGATGCCCAGATTCGCGGCATGCAGC GCGTTGACTTCAGTGCCGGGGTCGAAAGCCTCTGCCTGGACACGAACGCTCATCATCAACCTCCGGTCACGGGCGGAAAGAACGCGACTTCATCGCCATC
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MLKALKKMFGKSEAEQPAPTPITSIPASPAATGDTPDHAVQTQALDTTSEPSKARAPRTDKPRAERPRRERVAKPPVPEWKLEDFVVEPQEGKTRFHDFN LAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNV MTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTT DPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD VAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRAVVRSNA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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