Pseudomonas syringae pv. syringae B728a, Psyr_1070

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003724	RNA helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00661	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	psb03018	RNA degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00270	DEAD/DEAH box helicase	IPR011545	DEAD/DEAH box helicase domain	118	293	3.0E-48
CDD	cd18787	SF2_C_DEAD	-	-	317	445	5.14556E-56
PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	-	-	90	469	2.1E-122
CDD	cd00268	DEADc	-	-	105	306	3.57555E-93
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	53	75	-
Hamap	MF_00661	ATP-dependent RNA helicase RhlB [rhlB].	IPR023554	ATP-dependent RNA helicase RhlB type	93	475	52.040672
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	79	308	1.2E-74
SMART	SM00490	helicmild6	IPR001650	Helicase, C-terminal	356	437	4.0E-30
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	17	52	-
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	311	477	3.6E-46
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	75	-
SMART	SM00487	ultradead3	IPR014001	Helicase superfamily 1/2, ATP-binding domain	113	320	1.7E-51
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	328	437	2.1E-28
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	169	458	1.72E-71

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.