Pseudomonas syringae pv. syringae B728a, Psyr_0209
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0015969 | guanosine tetraphosphate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00691
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psb00230 | Purine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF04607 | Region found in RelA / SpoT proteins | IPR007685 | RelA/SpoT | 241 | 350 | 4.0E-36 |
| CDD | cd04876 | ACT_RelA-SpoT | - | - | 634 | 704 | 4.6419E-17 |
| CDD | cd01668 | TGS_RSH | IPR033655 | RelA/SpoT, TGS domain | 396 | 453 | 3.85221E-29 |
| CDD | cd05399 | NT_Rel-Spo_like | IPR007685 | RelA/SpoT | 220 | 337 | 5.79213E-39 |
| SUPERFAMILY | SSF81271 | TGS-like | IPR012676 | TGS-like | 382 | 454 | 1.11E-21 |
| Gene3D | G3DSA:3.10.20.30 | - | IPR012675 | Beta-grasp domain superfamily | 388 | 461 | 2.9E-29 |
| Gene3D | G3DSA:3.30.70.260 | - | - | - | 628 | 707 | 1.3E-13 |
| SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | - | - | 10 | 196 | 1.16E-69 |
| FunFam | G3DSA:3.30.460.10:FF:000001 | GTP pyrophosphokinase RelA | - | - | 198 | 331 | 4.3E-54 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | IPR043519 | Nucleotidyltransferase superfamily | 187 | 399 | 6.05E-60 |
| SMART | SM00954 | RelA_SpoT_2 | IPR007685 | RelA/SpoT | 241 | 351 | 5.1E-63 |
| SMART | SM00471 | hd_13 | IPR003607 | HD/PDEase domain | 47 | 159 | 7.0E-8 |
| Pfam | PF13328 | HD domain | - | - | 32 | 181 | 1.1E-50 |
| FunFam | G3DSA:1.10.3210.10:FF:000001 | GTP pyrophosphokinase RelA | - | - | 9 | 197 | 2.7E-86 |
| PANTHER | PTHR21262 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE | - | - | 9 | 704 | 0.0 |
| Pfam | PF02824 | TGS domain | IPR004095 | TGS | 395 | 453 | 6.6E-18 |
| FunFam | G3DSA:3.10.20.30:FF:000002 | GTP pyrophosphokinase (RelA/SpoT) | - | - | 387 | 461 | 2.6E-34 |
| Pfam | PF19296 | RelA/SpoT, AH and RIS domains | IPR045600 | RelA/SpoT, AH and RIS domains | 466 | 549 | 6.1E-9 |
| Pfam | PF13291 | ACT domain | IPR002912 | ACT domain | 628 | 704 | 3.3E-15 |
| FunFam | G3DSA:3.30.70.260:FF:000027 | (P)ppGpp synthetase II | - | - | 628 | 707 | 1.5E-50 |
| CDD | cd00077 | HDc | IPR003607 | HD/PDEase domain | 49 | 172 | 4.08287E-6 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | IPR043519 | Nucleotidyltransferase superfamily | 201 | 331 | 1.1E-44 |
| Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | - | - | 6 | 196 | 6.7E-72 |
| NCBIfam | TIGR00691 | JCVI: RelA/SpoT family protein | IPR004811 | RelA/SpoT family | 32 | 703 | 0.0 |
| SUPERFAMILY | SSF55021 | ACT-like | IPR045865 | ACT-like domain | 630 | 705 | 2.6E-7 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.