Pseudomonas chlororaphis EA105, NZ35_RS23900

Gene Feature Overview

Strain	Pseudomonas chlororaphis EA105 GCF_000783395.1|latest
Locus Tag	NZ35_RS23900
NCBI Old Locus Tag	NZ35_23920
Name	Synonym: NZ35_23920
Replicon	contig_31
Genomic location	39511 - 42690 (- strand)

Cross-References

RefSeq	WP_038367649.1
GI	740581910
INSDC	KHA70741.1
NCBI Locus Tag	NZ35_RS23900
NCBI Old Locus Tag	NZ35_23920
UniParc	UPI0005386303
UniProtKB Acc	A0A0A6FD65
UniProtKB ID	A0A0A6FD65_9PSED
UniRef100	UniRef100_A0A0A6FD65
UniRef50	UniRef50_Q880Q4
UniRef90	UniRef90_Q880Q4

Product

Feature Type	CDS
Coding Frame	1
Product Name	transporter
Synonyms
Evidence for Translation
Charge (pH 7)	-9.91
Kyte-Doolittle Hydrophobicity Value	0.285
Molecular Weight (kDa)	115.2
Isoelectric Point (pI)	5.42

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name	Definition	Accession	Model Type (?)	SNP	Cutoff	Bit Score	Percent Identity	CARD Version
adeF	AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879]	ARO:3000777	protein homolog model		Strict	1347.0	66.86	3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000417 (2093 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: NZ35_RS23900 Search term: transporter

Human Homologs

References