Pseudomonas chlororaphis EA105, NZ35_RS15040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCACTGTCGAAACCAATGTCCTACAAATGCTGGCGAATTCTGATAGCTGACGGGCAGCCTGCGCTGCACGCCCGAATCGGCAAGATTTTTAAAGAACTG GGCTGTCGCGAACTGACGCGGGTGCATTCGTTTCGTGAACTGTTGGGCGTGACCCATTACTCCAGCGAACCCTTCCAGCACTTTGACCTGATGATCATCA ACGCTGAGATGCTTGCTGCCGCCGGCGTGGATTGCGTGCGGTTCTTTGCAAGCAATGCGCAGATTCGCCACGGCGTGATTCATGACACCGTTCGTGGTCA TCCACAGGCTCAGACGATTTATGCCAACCACCGACGACAATTGATGCTGATCCGCACCCCGGACCGGCACACCCTCGGCCCTCTGCTGGAGCACCTCGAT GTTCAGGAACAATCCCACAACCTTTGAGACCTCTGCTGGCGGATCGAGTACGCGATTGGCCACGACACACCGTGCTCCCGGCATCGCCGATTCAATCGCC
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| DNA Sequence for Gene |
>NZ35_RS15040
GTGCCTGCTCTGCCGCTGCGTGTGCTGGTGCTGGAAGACCATGCATTCCAGCGCTCGGTGGCGGTCAACATGCTGCGTACGCTCGGTTGTGGCGAAGTCT TCGAAGCCAGTGACGGCGCTGAGGCGCTGGCGCTCTTGCAGGAAGTCGGTACGGTCGATGTCGCCCTGTGCGATTTGCAGATGGAGGGGATGGACGGGCT GGAGTTTCTGCAGCGGGTCGGCGCGTCAGGACAGGTCAAGTCGGTGATCATCAGCAGTTCCCTGTCGGCCGACCTGCGCCGCGCGGTGCATCAGATGGTG GCGTTGCTTGGCCTGGAACTGCTTGGCGATGTAGGCAAGCCTTTGCATGTGCAGGTGCTGGCGAATTTGCTGGGCAAATCCCTCGACAGGCCTGCTCTGG CGCAACCAACGGCCGCTGCCGTGACGCTGGCCAGTGAGGCGGCGGTTCGCCAAGCGCTGGCTCAGCAGCAATTGCAGGCCTGGTATCAGCCCAAATTCAA CCTGCAGACCGGTGAGGTCTGTGGTGTAGAGGTGCTCTGCCGTTGGCTCCACCCGACTCATGGCATCCTTTCACCCGCGCTGTTCATGCCTGTGCTGGAG CGTTGCGGGTTGCTCGACGAGTTGCTTTTCACGCAGATCGAACAGGCGCTGGGTGTGCAGCGAAGTGCCCGCGAGCAGGGCTTTACCTTGAATGTCGCGT TCAATCTGCAAGCTGTTCAATTGGCCAACGCTCAACTCACCGCCACCTTGAAAAGCCTGCTGGCGCAGCAGGGCGCTTGTGGTGCGGGCCTGACTTTCGA ATTGACCGAAAGCGGCCTGCTCGAAGCCCCGGCCACCAGCCTTGAAAGTCTCGTCCGCCTGAGGATGATGGGCTGTCGCCTGTCGATCGATGACTTCGGC GCCGGCTTCTCCTCATTGCAACGCTTGTGTCAGTTGCCGTTCAACGAGATCAAGCTCGACGCCGAATTCATTCGTAATCTTGAGCACGAACCGCGATGCC GGGCGGCGATCAGCAGCACGCTGGCATTAGGCGAAACCCTCGGCATGAATGTGGTGATCGAAGGGATCGAAACCGATGCGCAGCGCCGTGAACTGTTGGC CTTGGGGTGTTCTCAAGGGCAGGGCTACTGGTACGCGCGGCCGATGGCCGGGACTGAGTTGTTGCATTGGTTACAACGGCACGGTGATAGGCAGGACTCG GATGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACTTTTTTAGGAAAAGTCCTACAGAACCTGCCTAGTGTCTTGCGTAGTCTTGCCGCACCCAGAAACCGTGAACCCGGGAGATCGATCATGATCAATAA AGCCCTGCGCATCCTGATCGCAGACCCTCAGCATTTTCACCGGATGAAAATCGAGCGGCTGTTCAACGGCCTCAATTATTACCGCATTGCACCGGTGCAG AACCTCACCGAGCTGCTGACCCTGGTGGACTACGGTTGCGAGCCGTTCGATGTGGTGGTCATCAATGCCGAACTGGCGGCAGGTTCGCTGGATCTGCTAG GGTTTTTCCTCGATAACCCGCAGGTTCGTCAGGCGTTGATTTACAACGAAGGCACGGCACCGTTGCAGCCGGCTTCGGGATTTGCTCAGGAAAATGTCCA GATCAGCCATTTGCCTCTGCCCTCAAAGCAGTCGATAAGTCAGTTGATGGCGCTGGTTGAAGCACCTGCCAGGCTGCACGAGTTGACTGCGCGAAAGCCA
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| Amino Acid Sequence |
>signal peptide protein
MPALPLRVLVLEDHAFQRSVAVNMLRTLGCGEVFEASDGAEALALLQEVGTVDVALCDLQMEGMDGLEFLQRVGASGQVKSVIISSSLSADLRRAVHQMV ALLGLELLGDVGKPLHVQVLANLLGKSLDRPALAQPTAAAVTLASEAAVRQALAQQQLQAWYQPKFNLQTGEVCGVEVLCRWLHPTHGILSPALFMPVLE RCGLLDELLFTQIEQALGVQRSAREQGFTLNVAFNLQAVQLANAQLTATLKSLLAQQGACGAGLTFELTESGLLEAPATSLESLVRLRMMGCRLSIDDFG AGFSSLQRLCQLPFNEIKLDAEFIRNLEHEPRCRAAISSTLALGETLGMNVVIEGIETDAQRRELLALGCSQGQGYWYARPMAGTELLHWLQRHGDRQDS DG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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