Pseudomonas chlororaphis EA105, NZ35_RS01020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGAATCGGTATTTTTCCTACGCGTTCAAGACCTTATTCTGAACGCGCTTTCACGGGACACGCCGCAAAGCACGAAGCACTGGCCTTTGAGCAACTCAGG CCATTGCTGACAGATTTCAGATAAATCGAAGACTTCGGTTTATCGCCCCGGTGTTCACTGACGTTGATTTGTAGCTCCTTGATCCAACGTCTTACCTTGG CCGCTGCGTTTGCAGCGGCCTTTTTTATGGCTGTTGAAAAGTCCCCCCTCACCCTGCAATCAACTTCCTAGAACAGCGTCGGACGTTTCCTGGTGTTTAG AAGATTTCTCCGCGCTTTGTTATTAATCGGCGAAACCCCTCTCAAAACAACGCCCTGTTACTGACGGGCTTCTCGGATTTTGCAACAGCAAGTCTGTTGT AACTTGAAACACCTCAACCCTTCGCTGGCGACACGGACGTCACCAACCGGCCGTGCTGACTTGCCAGCGATTTATCACGCACATTCAAAAGGACATGAAT
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| DNA Sequence for Gene |
>NZ35_RS01020
ATGCAAAAGCCTCCACCCTTTGTGTTAACCGAAGCTGTTCATACGACAGCAACAGCGCCTCCAAACACAACGTTAATCAGGGGAACCGCTACCAACCTCC CCAACAGCGGCACGTTTGGTATTCCCAACAATGTGGGAGCAATTTCCCGGGCATTTACTGCTCACAGCGTGAAAACTGCTCACGAATTTCAAACCCATGT TGAACAACTACCCCAAACAATTGAACAGGAGCTGGCTGCAATACGTCTGGAAGGGTCCAGTCATCCGCTACCTCCTGCTGAAACCGTCACCCGAGAATTG GGAGTACGCCATACGCTAATTCTTAGAAAAACCGCTCAACACCGACAAAAAACTCTAAATTCCAATCAATTTTTCGGAGCTTCCCCGCTCAATAAAAGCT TTCACGATTTTTTTCAAAGAGCACAACGCATCGATAGCTCGGTCCATCCGCAAGGAGTGGCTATGCAGGCTTGGGGCGCTTCATACCGAGCGGCTCACGA AGCGAATTTGCTTTCGCAGTCAATTCAGATACTCAACCAACAGCAGGTCGAAGTGCACAAGTGGCTGGCTTTGGTGCAAACCAATGATCAAGCGCATGCA GCAGCGGCAGAAGCTCAGCGACTGGCTGACGAACGAGCGCGGATCGCGGCCGAACAACAACAACAACAACAACATCAGAGAGACATTGCCGAAGCTGCAC GTGCGGAGCAGGTACGACTAGCTGAAATGGCTGAGAGTCAGCGCTTGGCTCAAGAACGTGCTCGTATCTCATCCGAGCAACATTTGAAGGAACTCGCTGG CGCCGCGCAGCGCGAACATGGACATCACTGGGCACGGAAAAAAGCACGGATCGCAGCATTGGCAAAGTCTCGGCGCTCAGCGGCCGAACAGGCTCGGATA GCTGTCGATGCTGCAGCAAAACAAACGGGCGCAGAACGTGCACGGTTTGAAGCAAAAGCAGAAACATTACGCCGTACTGAGGCCGCAAGAGTACTTGATG AAAAAGCGCACCGTACCCAAAAGAAAGAGCAGTGGCGCCTGCGCGAAAGAGCGTTGCGCGCAGAGGAGGCGTTGTATCGCGCATACGCTGCAAAAGCGCG CCGCGAGAGGATATTGCAAGGCGTTTTAGAGGCTCAGGAAAAAAACCGCCAACAAGCATTGCTGGATGCTCAGACTGAGCCCGCGCGACGAGTAGAGAAT GCTCGCTTGAGAGCCCAGTGGCAGGCGCAAACAGAGGAACGCTGGAAAAATCCTATATTTGCCAACGTGGGCTCAACGGCCGCGTTTGGCCCGACGTTCG CCGGAACACTCGGCGCTTTAGGCAGCAACCCTACGACCGCTCTGGCACTCAAGACCGCCCTTCGCTCAGCGGTATCCATTGCCGTCGCAACGATTTCGAC CGCCGCTGCCCCCGTCCTCGTGGGCTTCGCGGCTCTGCTGGTTCCCTCAGAGCTGGGGAATGGTGACCTTTACTCCGCAAGCGTTCCACTGTCAGACCTT GCGCCCGTTCTGGAAGCAGATCTGTATGAGTTGGCAGCCGCCGAGGCTGAAGTCGATCTGCCAGTCAGACTCGGCTCCAGAGCCGTAGGAAACCGCGTAG AAATTGCCGTCGTCACCACTGATGGCGTAACAGTCCCCAGCAATGTGCCGGTGAGACTTGCCCGTTTCGACGCTCGGAAAAATGTTTACGTTTCCACGGC AACGGACCCCGGCTCCAGAGGCCCTGTCGTCACCTGGACACCACTGGTTGAACCGCAGAATCCCTCAACCGATTTCCCGTTGGTAGACACTGATTTACCG TTTTATGACGGTGCCGAGGTAAGACCAGATAGCGGACGGATTGATCCCCATCCGCAGTTGGATCTATACGGGTTTGGCGGATGGATCACAGTCTTTCCAA TCGAATCCGGAATACCACCGGTCTTCACGATGTTTCGGGATCGACGGCAAGATCCCGGCGTTGCGAGCGGGATGGGGCAGCCGGTTTCAGGTAGGTGGTT AGGAGCAGCTGCCACGGCGGAAGGCGCGCCGATTCCTGAGCAGATTGCGGATAAACTTCGGGGGAGGGAATTTTCGAGCTTTAAAGCGTTTCGAAGAGCG TTCTGGAAAGCGGTAGCAGGTGATGAGGATTTATTTCAGCTATTCAACCGCGTTGATCAGACAAGCCTACGCCGAGGATTGTCACCAAAGCCTCATCAAT CCGAGCACGTCGGTCAACGGCGAAAATACGAACTGCATCATGTAGAGCCTATTGAGCTTGGCGGAGCGGTTTACGAAATGGACAACCTGAAAATACTTAC TCCTAAGCGACACATTAAGATCCATCACCCAAAAAAGGCGCAGGGGAATGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAATCTTAAAGCAAGATTTGAAGACTACACCGAGCGCGAATATATAGAGCTCATAAATTCCTTATTCGAAGGTGACTACTCATCTGAGTACGAACATGAT CGTATTTTTGAAACGATCATCAGCACTTCCGAGCATCCAAATGCTTCTGATGTCTTATGCCATCCGGAAGAAGGCGTTGAGGACAGTCCGATAGGCGTGA TCGGCATTTTCAAGGAATGGCGAGCAGCCAACGGAAAAGCCGGATTCAAAATCGAAGAGTAAAAAAGCGAGCAGGCATTCATGCCTGCTCGCTTTTCTTT GCTGTTACAACGAATACTTCTGCAAATTCGCCATCATTTCCTTCAGCGCCTCGATATTGTCCTTCGGATGCGCCGCCCCTTCGAAATCACAAATCTGCTG CCAGTGCGCCGCGACATCTTCCGGCGAGAAACCCGCCCGTGGATCAAACCCGGCGCCGAGGCTGCGCTCCCAACGCACCTTGCCCATCCAGCCACCACCG
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| Amino Acid Sequence |
>S-type Pyocin
MQKPPPFVLTEAVHTTATAPPNTTLIRGTATNLPNSGTFGIPNNVGAISRAFTAHSVKTAHEFQTHVEQLPQTIEQELAAIRLEGSSHPLPPAETVTREL GVRHTLILRKTAQHRQKTLNSNQFFGASPLNKSFHDFFQRAQRIDSSVHPQGVAMQAWGASYRAAHEANLLSQSIQILNQQQVEVHKWLALVQTNDQAHA AAAEAQRLADERARIAAEQQQQQQHQRDIAEAARAEQVRLAEMAESQRLAQERARISSEQHLKELAGAAQREHGHHWARKKARIAALAKSRRSAAEQARI AVDAAAKQTGAERARFEAKAETLRRTEAARVLDEKAHRTQKKEQWRLRERALRAEEALYRAYAAKARRERILQGVLEAQEKNRQQALLDAQTEPARRVEN ARLRAQWQAQTEERWKNPIFANVGSTAAFGPTFAGTLGALGSNPTTALALKTALRSAVSIAVATISTAAAPVLVGFAALLVPSELGNGDLYSASVPLSDL APVLEADLYELAAAEAEVDLPVRLGSRAVGNRVEIAVVTTDGVTVPSNVPVRLARFDARKNVYVSTATDPGSRGPVVTWTPLVEPQNPSTDFPLVDTDLP FYDGAEVRPDSGRIDPHPQLDLYGFGGWITVFPIESGIPPVFTMFRDRRQDPGVASGMGQPVSGRWLGAAATAEGAPIPEQIADKLRGREFSSFKAFRRA FWKAVAGDEDLFQLFNRVDQTSLRRGLSPKPHQSEHVGQRRKYELHHVEPIELGGAVYEMDNLKILTPKRHIKIHHPKKAQGNE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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