Pseudomonas aeruginosa 3576, AJ63_04177 (prpB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 3576 adVri-supercont1.20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGGTGGTGTCGCTGAGCCACGCCGAGCTGATCGAGCTCTACGAGATCCGCGAGTCCCTGGAAGGCATGGCCTGCCGACTGGCCGCCGAGCGCATGAGC CAGGCCGAGATCGACGAGTTGCGTCGGGTGCTCGATACCCACGAGCGCGACGAGGCGTTCCAGGCCGGGCGCGGCTATTACCAGCAGGAAGGCGACTACG ACTTCCACTACCGGATCATCCAGGGCAGCGGCAACGCCACCCTCACCCGCATGCTCTGCGGCGAGCTCTACCAACTGGTGCGGATGTACCGCATCCAGTA CTCGACCACGCCGAACCGGCCGCGCCAGGCCTTCGCCGAACACCACCGCATTCTCGACGCCATCGCCGACCGTGACGGCGAACTGGCCGAGCTGCTGATG CGCCGCCACATCAGTGCGTCGCGCCGCAATATCGAGCGCCAGCTGGAACCCCAGCCGGCGAAGCTCGCCTCCGCTTCCTCCACCGTCTAAGAGGTCCGTG
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| DNA Sequence for Gene |
>AJ63_04177
|prpB
ATGAGCCAGACGTCCCTTACCCCCGGCCAGCGCTTCCGCGAAGCCGTGGCCACCGAACACCCGCTGCAGGTGGTCGGCACCATCAACGCCAACCACGCCC TGCTGGCCAAGCGCGCCGGCTTCAAGGCCATCTACCTGTCCGGCGGCGGCGTCGCCGCCGGTTCCCTGGGCCTGCCGGACCTGGGTATCAGCGGCCTCGA CGACGTGCTCACCGACGTGCGCCGGATCACCGACGTCTGCGACCTGCCGCTGCTGGTGGACGTCGACACCGGCTTCGGCTCCTCGGCGTTCAACGTCGCC CGCACGGTGAAGTCGATGATCAAGTTCGGCGCCGCCGCGATGCATATCGAGGACCAGGTCGGCGCCAAGCGCTGCGGCCATAGGCCGAACAAGGAGATCG TCTCGCAGCAGGAGATGGTCGACCGCATCAAGGCCGCCGTCGATGCCCGCAGCGACGACTCCTTCGTGATCATGGCGCGCACCGACGCGCTGGCCGTGGA AGGCCTGCAGGCCGCCATCGACCGCGCCTGCGCCTGTGTCGAGGCCGGTGCCGACATGATCTTCCCGGAAGCCATGACCGAACTGGCCATGTACAAGGAA TTCGCCGCCGCGGTGAAGGTGCCGGTGCTGGCCAACATCACCGAGTTCGGCGCCACCCCGCTGTTCACCACCGACGAACTGGCCTCCGCCGACGTGTCCC TGGTGCTCTACCCGCTGTCGGCCTTCCGCGCCATGAACAAGGCGGCGGAGAACGTCTACACCGCGATCCGTCGCGACGGCACCCAGAAGAATGTGATCGA TACCATGCAGACCCGCATGGAGCTGTACGATCGCATCGATTACCACAGCTTCGAGCAGAAGCTCGACGCGCTCTTCGCGCAGAAGAAGAACGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATCGAGCCCGGCGTGCGCCTGAGCGCCGGTCCGCGAACCCCGTGAAACCGAGTTGCAGCATCCAGAAAAAGTTCAAGAAAGGAGAGAGCAATGGCTGA AGCAAAAGTACTGAGTGGCGCCGGCCTGCGTGGCCAGGTGGCCGGTCAGACAGCCCTGTCCACCGTCGGCCAGGAAGGCGCCGGCCTGACCTACCGTGGC TACGACGTCCGCGACCTGGCGGCGGCGGCGATCTTCGAGGAAGTCGCCTACCTGCTGCTCTACGGCGAACTGCCGAACAAGCAACAGCTCGACGCCTACC TGAAGAAGCTCCAGGGCCAGCGCGACCTGCCGCAGGCGCTGAAGGAAGTTCTCGAACGGATTCCCAAGGACGCCCACCCGATGGACGTGATGCGCACTGG CGCCTCGGTCCTCGGCACCCTGGAACCGGAGCTGAGCTTCGACCAGCAGCGCGACGTCGCCGACCGCCTGCTCGCCGCCTTCCCGGCGATCATGACCTAC
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| Amino Acid Sequence |
>2-methylisocitrate lyase
MSQTSLTPGQRFREAVATEHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGLPDLGISGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVA RTVKSMIKFGAAAMHIEDQVGAKRCGHRPNKEIVSQQEMVDRIKAAVDARSDDSFVIMARTDALAVEGLQAAIDRACACVEAGADMIFPEAMTELAMYKE FAAAVKVPVLANITEFGATPLFTTDELASADVSLVLYPLSAFRAMNKAAENVYTAIRRDGTQKNVIDTMQTRMELYDRIDYHSFEQKLDALFAQKKNA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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