Pseudomonas putida BIRD-1, PPUBIRD1_3002 (qedH)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida BIRD-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCAGTTCTGGTTGTAGGCCGAGGCGCCGATTTCCACGGCCTTGTCGTGCTCGGGCGAGCTGCGGTACGGGTTGACCGCGGCCCAGCCGTCGCCGTCC AGGCTCACGCCAGTGTCCTTGATCGGGGTCAGGCCCTTGGTCTCCACTGCCTGGGGCACCACGTTGCCATGGGCCCAGGCTGTACCGGTCAGCACGGCTG CGGCCAGCAACCCAGCAGCAAGCAACACATTGCATTTTGTTGTCATTGTTATGCCCTCACCATTGCACACAAAGCCTCAACCACAGAGGCCGTGCCGCCA TCTTAGAAACAGCCCGCGGGCGGCCGAATGCTGCTTTGGTGGCCGGGCCTTAATCCCTTGGTAGTAGGGCTTGTGGCGAAAGGCCAATTGAGGTGCCGTG CGGGAACTATTCCCGGCAAGGGCGGGACTTTTTCCGTATCCCGCGACAGCCGCTGCGCCCCACCCTGTGCTGGCCAAAACCTCCACTGGGAACTGCAACC
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| DNA Sequence for Gene |
>PPUBIRD1_3002
|qedH
ATGACAATAAGATCGCTACCCGCCCTTTCCCCTCTGGCCCTGAGCGTGCGCGTCCTGCTGATGGCCGGTAGCCTGGCCCTGGGCAATGTGGCAACAGCGG CCAGCACACCCGCTGCACCTGCCGGCAAGAACGTCACCTGGGAAGACATCGCCAATGACCACCTGACCACCCGGGACGTGCTGCAGTACGGCATGGGCAC CAATGCCCAGCGCTGGAGCCCGCTGGCCCAGGTCAATGACAAGAACGTGTTCAAGCTGACCCCGGCCTGGTCCTACTCCTTCGGCGACGAGAAGCAGCGC GGCCAGGAATCCCAGGCCATCGTCAGCGATGGCGTGGTCTACGTCACCGGCTCGTACTCGCGGGTATTCGCCCTTGATGCCAAGACCGGCAAACGCCTGT GGACCTACAACCACCGCCTGCCCGACAACATTCGTCCCTGCTGCGACGTGGTCAACCGCGGGGCGGCGATCTACGGTGACAAGATCTACTTCGGCACCCT CGACGCGCGTGTCATCGCCCTCGACAAGCGCACCGGCAAAGTGGTGTGGAACAAGAAGTTCGGCGACCACAGCGCCGGCTACACCATGACCGGTGCGCCA GTGCTGATCAAGGACAAGACCAGCGGCAAGGTGCTGTTGATCCACGGCAGCTCCGGCGATGAGTTCGGCGTGGTCGGCCAGCTGTTCGCGCGCGACCCGG ACACCGGCGAAGAGGTGTGGATGCGGCCCTTCGTCGAGGGCCACATGGGCCGCCTGAACGGCAAGGACAGCACCCCGACCGGCGACGTCAAGGCGCCGTC CTGGCCAGACGACCCGACCACCGAAACCGGCAAGGTCGAAGCCTGGAGCCACGGCGGCGGCGCCCCTTGGCAAAGCGCCAGTTTCGACCCCGAAACCAAC ACCATCATTGTCGGCGCCGGCAACCCCGGCCCTTGGAATACCTGGGCGCGCACGTCGAAAGACGGCAACCCGCATGACTTCGACAGCCTGTACACCTCCG GCCAGGTCGGCGTCGACCCGAGCACCGGCGAGGTCAAATGGTTCTACCAGCACACCCCCAACGATGCCTGGGACTTCTCCGGCAACAACGAGCTGGTGCT GTTCGACTACAAGGACAAGAACGGCAACGTGGTCAAGGCCACCGCGCACGCCGACCGCAACGGCTTCTTCTATGTGGTCGACCGCAACAACGGCAAACTG CAGAACGCCTTCCCCTTCGTCGACAACATCACCTGGGCCAGCCATATCGACCTGAAGACCGGCCGCCCGGTGGAAAACCCCGGCCAACGCCCGGCCAAGC CGCTGCCGGGTGAAACCAAGGGCAAGCCGGTGGAAGTCTCGCCACCGTTCCTGGGCGGCAAGAACTGGAACCCCATGGCCTACAGCCAGGACACCGGGCT GTTCTACATCCCCGGCAACCAGTGGAAAGAGGAATACTGGACCGAGGAAGTGAACTACAAGAAGGGCTCGGCTTACCTGGGCATGGGCTTCCGGATCAAG CGCATGTACGACGACCATGTCGGCACGTTGCGCGCCATGGATCCGACGACCGGCAAGCTGGTCTGGGAGCACAAGGAACACCTGCCGTTATGGGCCGGTG TGTTGGCGACCAAGGGCAACCTGGTATTCACCGGCACCGGCGACGGCTTCTTCAAGGCCTTCGACGCCAAGACGGGCAAAGAGCTGTGGAAGTTCCAGAC CGGCAGCGGCATCGTCTCGCCGCCCATCACCTGGGAACAGGACGGCGAGCAGTACATCGGCGTGACCGTGGGCTACGGCGGTGCGGTACCGCTGTGGGGC GGCGACATGGCCGAGCTGACCAAACCGGTGGCCCAGGGTGGTTCGTTCTGGGTGTTCAAGATCCCGAGCTGGGACAACAAGACTGCACAGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGCAGCGGGGAGCGGCCTTCGCCCCTCCCCGTTTCTGCCCTTCTCCTGCCCAGAGGCTTTTGCCATGAATTACCTGCCCTTGACCTTGCTGCTGGCGC TATCCCCTGCCCTGGCAGTGAACGCCGACGACGCCGGCACCGATACCCCCTTGATCATCAACGGCTGCGTGATTGCCGAAGCCAGCCAGTGCCCGGGGGC CAACCTGCGCGGCGCCAACCTGGCCAACCAGGACCTGCGCAAGATGAACCTGGCCGGTGCCGACCTGCGCGATGCCGACCTGCGTCATGCTCAGCTGGAC CTGGCAAATCTGGAAAAAGCCCGCCTGCAAGGTGCCAACCTGACCCGCGCCAGCCTGCAACAGAGCAATCTGCGCCTGGCTGACCTGAGCAACAGCAGGC TGGTGGCCATTCAAGGCTGGGGCTTGTTCGCCCAGGGCGCACAGTTTGAAAAGGCGGACCTGCGCGCAGCCTACCTGCAGTTCGCCAGGCTGTCCGGGGC
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| Amino Acid Sequence |
>QedH
MTIRSLPALSPLALSVRVLLMAGSLALGNVATAASTPAAPAGKNVTWEDIANDHLTTRDVLQYGMGTNAQRWSPLAQVNDKNVFKLTPAWSYSFGDEKQR GQESQAIVSDGVVYVTGSYSRVFALDAKTGKRLWTYNHRLPDNIRPCCDVVNRGAAIYGDKIYFGTLDARVIALDKRTGKVVWNKKFGDHSAGYTMTGAP VLIKDKTSGKVLLIHGSSGDEFGVVGQLFARDPDTGEEVWMRPFVEGHMGRLNGKDSTPTGDVKAPSWPDDPTTETGKVEAWSHGGGAPWQSASFDPETN TIIVGAGNPGPWNTWARTSKDGNPHDFDSLYTSGQVGVDPSTGEVKWFYQHTPNDAWDFSGNNELVLFDYKDKNGNVVKATAHADRNGFFYVVDRNNGKL QNAFPFVDNITWASHIDLKTGRPVENPGQRPAKPLPGETKGKPVEVSPPFLGGKNWNPMAYSQDTGLFYIPGNQWKEEYWTEEVNYKKGSAYLGMGFRIK RMYDDHVGTLRAMDPTTGKLVWEHKEHLPLWAGVLATKGNLVFTGTGDGFFKAFDAKTGKELWKFQTGSGIVSPPITWEQDGEQYIGVTVGYGGAVPLWG GDMAELTKPVAQGGSFWVFKIPSWDNKTAQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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