Pseudomonas putida BIRD-1, PPUBIRD1_3002 (qedH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03075
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03075
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd10277
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb00625 Chloroalkane and chloroalkene degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00010 Glycolysis / Gluconeogenesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 483 525 83.0
FunFam G3DSA:2.140.10.10:FF:000003 Methanol dehydrogenase, large subunit - - 43 624 0.0
CDD cd10277 PQQ_ADH_I IPR034119 PQQ-dependent type I alcohol dehydrogenase 50 621 0.0
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 369 405 280.0
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 155 186 2.2E-6
Gene3D G3DSA:2.140.10.10 - - - 43 624 0.0
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 206 243 230.0
SUPERFAMILY SSF50998 Quinoprotein alcohol dehydrogenase-like IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily 56 617 0.0
Pfam PF01011 PQQ enzyme repeat IPR002372 Pyrrolo-quinoline quinone repeat 540 576 2.5E-10
MobiDBLite mobidb-lite consensus disorder prediction - - 250 286 -
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 105 137 1.7E-6
SMART SM00564 ire1_9 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat 535 566 6.9E-7
NCBIfam TIGR03075 JCVI: PQQ-dependent dehydrogenase, methanol/ethanol family IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family 42 594 0.0
Pfam PF13360 PQQ-like domain IPR002372 Pyrrolo-quinoline quinone repeat 90 347 2.9E-17
MobiDBLite mobidb-lite consensus disorder prediction - - 421 443 -
PANTHER PTHR32303 QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) - - 35 593 4.0E-53

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.