Pseudomonas sp. BRG-100, JH25_RS12310

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. BRG-100 scaffold00001, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGGGCCAGCCTCAAGGGCGAGTTCCGTATGCAGCAGACGATGATCCGCCCCGCTGAAAACAACCCGTTGAAATTCGCCCCGAATGCCGACGAAGCGTTAC TGCTGCTGCTTCGTCATGGCAACCAGGCGTTTATGGCGCCGGACATCGCGGTACGGGACAGTTTCGATGACCTGCGCGCCCACCAGTTGGCCGTGATGGC TGGCGTGGAAGCGGCGATCAAACACCTGCTCGCGCGCTTTGAACCGGCGCAGTTGGAGGAACGCATGGGCAAGCCCGGTGGCCTTTCGAGCATTTTCAAC GGCTCGCGCCAGGCCCAGTACTGGCAGCAGTTTACCGAGCTCTACAGCAACATTTCGCGCGAGGCCCAGGAGGATTTCCAGGACCTGTTCGGTCGCGAAT TCAGCCGGGCCTACGAAGAGCACAGCGCACGACAGCGACGCTAAAGCGCGTCGCACTTATGGATAAAACGGATAGCTAAACACGTCATTGAGGACGCAGG
DNA Sequence for Gene
>JH25_RS12310
ATGATTCCCAGGTTTTTACTCGCAGCCGCTACCGCGCTGCTGCTGACCGCGTGTGCAAACGACGCGGCCAAACCCGAAGCGGCTGCCGACACGCAAGCCA ACAGCGCCGCCGTCGAGTTGCATTTCCACGCGATCGCCGGGCTCAACCCCGGCGCCAATGGCCAGGCTGCGCCGGTGCGGGTGCGTATTTTCGAACTGAA AAACGCCGCGACCTTTTCCCGCTCCGATTACTTCGCCCTGGCTGACCGTGCGCAATCCACCCTCGGCCTCGACCTGCTGGACCAGGATGAAGTGGTGGTG CAACCCGGCCAGCAACTGAGCATTCAGCGCGACCTCAACCCGGCCACGCGCCAGATCGGCGTGCTGGTGGGCTATCGCGAGTTGGACCGCGCGCAATGGC GCGCCGTGATCAACGTAGCGCCGCGCCAATCCAGCGAATACCAGATCAGCCTCGATGTGCGTGCCGTGCGCGCCGACGTCGTGGTTTCCCCCTCCAGCCC AGCCCAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CAAGCAATCGGAGCCCCCATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATCGCAACGCAGCACTTCCAGCAGCATGACCGTTACCTGG AAAACCTGATCGACGCGCGCAGCCGTCCGTTGTCGGCAGGGGCCTGGGGTTTTTCCGAGTTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAGCTGGC GATCGTATCGGCCCGCGGCCTGTTGCCCGATGGCACGCCCTTCAATATCCCCCAGGATGACCTGGCGCCGAGCCCGTTGAGTATCGACGACAACCTGCGC GACGGCTTGGTGTACCTGGCCCTGCCGCTCAAGCGTGCCGGTGCGCGTGACACGGTTGAGGAAGGCGAAGCCCTGGAAGCTGCGCGTTATGTCAGCCAGG TGCGTGAAGTGCGCGATGACAACGCGCCGTTCGAAAACCGCGCCCCGGTAGCCGTGGGGTCGCGGGCATTGCGCCTGCTGACGGCGCAGGACGGCATCAG
Amino Acid Sequence
>type VI secretion protein
MIPRFLLAAATALLLTACANDAAKPEAAADTQANSAAVELHFHAIAGLNPGANGQAAPVRVRIFELKNAATFSRSDYFALADRAQSTLGLDLLDQDEVVV QPGQQLSIQRDLNPATRQIGVLVGYRELDRAQWRAVINVAPRQSSEYQISLDVRAVRADVVVSPSSPAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site